A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.
This report has been generated by the Plague Phylogeography analysis pipeline. For information about how to interpret these results, please see the documentation.
Report generated on 2020-11-09, 09:43 based on data in:
/2/scratch/keaton/plague-phylogeography/results/qualimap/assembly/GCA_009669545.1_ASM966954v1_genomic/2/scratch/keaton/plague-phylogeography/results/qualimap/assembly/GCA_009669555.1_ASM966955v1_genomic/2/scratch/keaton/plague-phylogeography/results/qualimap/assembly/GCA_009669565.1_ASM966956v1_genomic/2/scratch/keaton/plague-phylogeography/results/qualimap/assembly/GCA_009669605.1_ASM966960v1_genomic/2/scratch/keaton/plague-phylogeography/results/qualimap/assembly/GCA_009669625.1_ASM966962v1_genomic/2/scratch/keaton/plague-phylogeography/results/qualimap/assembly/GCA_009669675.1_ASM966967v1_genomic/2/scratch/keaton/plague-phylogeography/results/qualimap/assembly/GCA_009669635.1_ASM966963v1_genomic/2/scratch/keaton/plague-phylogeography/results/qualimap/assembly/GCA_009669665.1_ASM966966v1_genomic/2/scratch/keaton/plague-phylogeography/results/qualimap/assembly/GCA_009669725.1_ASM966972v1_genomic/2/scratch/keaton/plague-phylogeography/results/qualimap/assembly/GCA_009669715.1_ASM966971v1_genomic/2/scratch/keaton/plague-phylogeography/results/qualimap/assembly/GCA_009669705.1_ASM966970v1_genomic/2/scratch/keaton/plague-phylogeography/results/qualimap/assembly/GCA_009669775.1_ASM966977v1_genomic/2/scratch/keaton/plague-phylogeography/results/qualimap/assembly/GCA_009669765.1_ASM966976v1_genomic/2/scratch/keaton/plague-phylogeography/results/qualimap/assembly/GCA_009669805.1_ASM966980v1_genomic/2/scratch/keaton/plague-phylogeography/results/qualimap/assembly/GCA_009669825.1_ASM966982v1_genomic/2/scratch/keaton/plague-phylogeography/results/qualimap/assembly/GCA_009669835.1_ASM966983v1_genomic/2/scratch/keaton/plague-phylogeography/results/qualimap/assembly/GCA_009669845.1_ASM966984v1_genomic/2/scratch/keaton/plague-phylogeography/results/qualimap/assembly/GCA_009669875.1_ASM966987v1_genomic/2/scratch/keaton/plague-phylogeography/results/qualimap/assembly/GCA_009669905.1_ASM966990v1_genomic/2/scratch/keaton/plague-phylogeography/results/qualimap/assembly/GCA_009669955.1_ASM966995v1_genomic/2/scratch/keaton/plague-phylogeography/results/qualimap/assembly/GCA_009669925.1_ASM966992v1_genomic/2/scratch/keaton/plague-phylogeography/results/qualimap/assembly/GCA_009669935.1_ASM966993v1_genomic/2/scratch/keaton/plague-phylogeography/results/qualimap/assembly/GCA_009669975.1_ASM966997v1_genomic/2/scratch/keaton/plague-phylogeography/results/qualimap/assembly/GCA_009670005.1_ASM967000v1_genomic/2/scratch/keaton/plague-phylogeography/results/qualimap/assembly/GCA_009670045.1_ASM967004v1_genomic/2/scratch/keaton/plague-phylogeography/results/qualimap/assembly/GCA_009670015.1_ASM967001v1_genomic/2/scratch/keaton/plague-phylogeography/results/qualimap/assembly/GCA_009670055.1_ASM967005v1_genomic/2/scratch/keaton/plague-phylogeography/results/qualimap/assembly/GCA_009670075.1_ASM967007v1_genomic/2/scratch/keaton/plague-phylogeography/results/qualimap/assembly/GCA_009670115.1_ASM967011v1_genomic/2/scratch/keaton/plague-phylogeography/results/qualimap/assembly/GCA_009667895.1_ASM966789v1_genomic/2/scratch/keaton/plague-phylogeography/results/qualimap/assembly/GCA_009670135.1_ASM967013v1_genomic/2/scratch/keaton/plague-phylogeography/results/qualimap/assembly/GCA_009670155.1_ASM967015v1_genomic/2/scratch/keaton/plague-phylogeography/results/qualimap/assembly/GCA_009670105.1_ASM967010v1_genomic/2/scratch/keaton/plague-phylogeography/results/qualimap/assembly/GCA_009670185.1_ASM967018v1_genomic/2/scratch/keaton/plague-phylogeography/results/qualimap/assembly/GCA_009670205.1_ASM967020v1_genomic/2/scratch/keaton/plague-phylogeography/results/qualimap/assembly/GCA_009670225.1_ASM967022v1_genomic/2/scratch/keaton/plague-phylogeography/results/qualimap/assembly/GCA_009670235.1_ASM967023v1_genomic/2/scratch/keaton/plague-phylogeography/results/qualimap/assembly/GCA_009670245.1_ASM967024v1_genomic/2/scratch/keaton/plague-phylogeography/results/qualimap/assembly/GCA_009667925.1_ASM966792v1_genomic/2/scratch/keaton/plague-phylogeography/results/qualimap/assembly/GCA_009670285.1_ASM967028v1_genomic/2/scratch/keaton/plague-phylogeography/results/qualimap/assembly/GCA_009670305.1_ASM967030v1_genomic/2/scratch/keaton/plague-phylogeography/results/qualimap/assembly/GCA_009670345.1_ASM967034v1_genomic/2/scratch/keaton/plague-phylogeography/results/qualimap/assembly/GCA_009667935.1_ASM966793v1_genomic/2/scratch/keaton/plague-phylogeography/results/qualimap/assembly/GCA_009670355.1_ASM967035v1_genomic/2/scratch/keaton/plague-phylogeography/results/qualimap/assembly/GCA_009670325.1_ASM967032v1_genomic/2/scratch/keaton/plague-phylogeography/results/qualimap/assembly/GCA_009667885.1_ASM966788v1_genomic/2/scratch/keaton/plague-phylogeography/results/qualimap/assembly/GCA_009670385.1_ASM967038v1_genomic/2/scratch/keaton/plague-phylogeography/results/qualimap/assembly/GCA_009667945.1_ASM966794v1_genomic/2/scratch/keaton/plague-phylogeography/results/qualimap/assembly/GCA_009670415.1_ASM967041v1_genomic/2/scratch/keaton/plague-phylogeography/results/qua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/plague-phylogeography/results/snippy_pairwise/assembly/GCA_000269385.1_ASM26938v1_genomic/2/scratch/keaton/plague-phylogeography/results/snippy_pairwise/assembly/GCA_000268965.1_ASM26896v1_genomic/2/scratch/keaton/plague-phylogeography/results/snippy_pairwise/assembly/GCA_000268945.1_ASM26894v1_genomic/2/scratch/keaton/plague-phylogeography/results/snippy_pairwise/assembly/GCA_000268925.1_ASM26892v1_genomic/2/scratch/keaton/plague-phylogeography/results/snippy_pairwise/assembly/GCA_000269365.1_ASM26936v1_genomic/2/scratch/keaton/plague-phylogeography/results/snippy_pairwise/assembly/GCA_000268905.1_ASM26890v1_genomic/2/scratch/keaton/plague-phylogeography/results/snippy_pairwise/assembly/GCA_000268885.1_ASM26888v1_genomic/2/scratch/keaton/plague-phylogeography/results/snippy_pairwise/assembly/GCA_000268865.1_ASM26886v1_genomic/2/scratch/keaton/plague-phylogeography/results/snippy_pairwise/assembly/GCA_000268865.2_ASM26886v2_genomic/2/scratch/keaton/plague-phylogeography/results/snippy_pairwise/assembly/GCA_000268845.1_ASM26884v1_genomic/2/scratch/keaton/plague-phylogeography/results/snippy_pairwise/assembly/GCA_000268825.1_ASM26882v1_genomic/2/scratch/keaton/plague-phylogeography/results/snippy_pairwise/assembly/GCA_000268805.1_ASM26880v1_genomic/2/scratch/keaton/plague-phylogeography/results/snippy_pairwise/assembly/GCA_000268805.2_ASM26880v2_genomic/2/scratch/keaton/plague-phylogeography/results/snippy_pairwise/assembly/GCA_000268785.1_ASM26878v1_genomic/2/scratch/keaton/plague-phylogeography/results/snippy_pairwise/assembly/GCA_000269345.1_ASM26934v1_genomic/2/scratch/keaton/plague-phylogeography/results/snippy_pairwise/assembly/GCA_000268765.1_ASM26876v1_genomic/2/scratch/keaton/plague-phylogeography/results/snippy_pairwise/assembly/GCA_000269325.1_ASM26932v1_genomic/2/scratch/keaton/plague-phylogeography/results/snippy_pairwise/assembly/GCA_000269305.1_ASM26930v1_genomic/2/scratch/keaton/plague-phylogeography/results/snippy_pairwise/assembly/GCA_000268745.1_ASM26874v1_genomic/2/scratch/keaton/plague-phylogeography/results/snippy_pairwise/assembly/GCA_000269285.1_ASM26928v1_genomic/2/scratch/keaton/plague-phylogeography/results/snippy_pairwise/assembly/GCA_000269285.2_ASM26928v2_genomic/2/scratch/keaton/plague-phylogeography/results/snippy_pairwise/assembly/GCA_000269265.1_ASM26926v1_genomic/2/scratch/keaton/plague-phylogeography/results/snippy_pairwise/assembly/GCA_000268725.1_ASM26872v1_genomic/2/scratch/keaton/plague-phylogeography/results/snippy_pairwise/assembly/GCA_000268725.2_ASM26872v2_genomic/2/scratch/keaton/plague-phylogeography/results/snippy_pairwise/assembly/GCA_000268685.1_ASM26868v1_genomic/2/scratch/keaton/plague-phylogeography/results/snippy_pairwise/assembly/GCA_000268665.1_ASM26866v1_genomic/2/scratch/keaton/plague-phylogeography/results/snippy_pairwise/assembly/GCA_000268525.1_ASM26852v1_genomic/2/scratch/keaton/plague-phylogeography/results/snippy_pairwise/assembly/GCA_000268485.1_ASM26848v1_genomic/2/scratch/keaton/plague-phylogeography/results/snippy_pairwise/assembly/GCA_000268485.2_ASM26848v2_genomic/2/scratch/keaton/plague-phylogeography/results/snippy_pairwise/assembly/GCA_000268385.1_ASM26838v1_genomic/2/scratch/keaton/plague-phylogeography/results/snippy_pairwise/assembly/GCA_000268365.1_ASM26836v1_genomic/2/scratch/keaton/plague-phylogeography/results/snippy_pairwise/assembly/GCA_000268345.1_ASM26834v1_genomic/2/scratch/keaton/plague-phylogeography/results/snippy_pairwise/assembly/GCA_000268585.1_ASM26858v1_genomic/2/scratch/keaton/plague-phylogeography/results/snippy_pairwise/assembly/GCA_000268565.1_ASM26856v1_genomic/2/scratch/keaton/plague-phylogeography/results/snippy_pairwise/assembly/GCA_000268325.1_ASM26832v1_genomic/2/scratch/keaton/plague-phylogeography/results/snippy_pairwise/assembly/GCA_000268545.1_ASM26854v1_genomic/2/scratch/keaton/plague-phylogeography/results/snippy_pairwise/assembly/GCA_000382545.1_Yersinia_pestis_assembly_genomic/2/scratch/keaton/plague-phylogeography/results/snippy_pairwise/assembly/GCA_000382525.1_Yersinia_pestis_G3768_assembly_genomic/2/scratch/keaton/plague-phylogeography/results/snippy_pairwise/sra/SAMEA5818830/2/scratch/keaton/plague-phylogeography/results/snippy_pairwise/sra/SAMEA5818829/2/scratch/keaton/plague-phylogeography/results/snippy_pairwise/sra/SAMEA5818828/2/scratch/keaton/plague-phylogeography/results/snippy_pairwise/sra/SAMEA5818826/2/scratch/keaton/plague-phylogeography/results/snippy_pairwise/sra/SAMEA5818825/2/scratch/keaton/plague-phylogeography/results/snippy_pairwise/sra/SAMEA5818822/2/scratch/keaton/plague-phylogeography/results/snippy_pairwise/sra/SAMEA5818821/2/scratch/keaton/plague-phylogeography/results/snippy_pairwise/sra/SAMEA5818818/2/scratch/keaton/plague-phylogeography/results/snippy_pairwise/sra/SAMEA5818817/2/scratch/keaton/plague-phylogeography/results/snippy_pairwise/sra/SAMEA5818815/2/scratch/keaton/plague-phylogeography/results/snippy_pairwise/sra/SAMEA5818813/2/scratch/keaton/plague-phylogeography/results/snippy_pairwise/sra/SAMEA5818811/2/scratch/keaton/plague-phylogeography/results/snippy_pairwise/sra/SAMEA5818809/2/scratch/keaton/plague-phylogeography/results/snippy_pairwise/sra/SAMEA5818808/2/scratch/keaton/plague-phylogeography/results/snippy_pairwise/sra/SAMEA5818806/2/scratch/keaton/plague-phylogeography/results/snippy_pairwise/sra/SAMEA5818805/2/scratch/keaton/plague-phylogeography/results/snippy_pairwise/sra/SAMEA5818804/2/scratch/keaton/plague-phylogeography/results/snippy_pairwise/sra/SAMEA5818803/2/scratch/keaton/plague-phylogeography/results/snippy_pairwise/sra/SAMEA5818801/2/scratch/keaton/plague-phylogeography/results/snippy_pairwise/sra/SAMEA5818800/2/scratch/keaton/plague-phylogeography/results/snippy_pairwise/sra/SAMEA5818799/2/scratch/keaton/plague-phylogeography/results/snippy_pairwise/sra/SAMEA5818798/2/scratch/keaton/plague-phylogeography/results/snippy_pairwise/sra/SAMEA5661390/2/scratch/keaton/plague-phylogeography/results/snippy_pairwise/sra/SAMEA5661389/2/scratch/keaton/plague-phylogeography/results/snippy_pairwise/sra/SAMEA5661385/2/scratch/keaton/plague-phylogeography/results/snippy_pairwise/sra/SAMEA5661384/2/scratch/keaton/plague-phylogeography/results/snippy_pairwise/sra/SAMEA5661375/2/scratch/keaton/plague-phylogeography/results/snippy_pairwise/sra/SAMEA5661372/2/scratch/keaton/plague-phylogeography/results/snippy_pairwise/sra/SAMEA5661367/2/scratch/keaton/plague-phylogeography/results/snippy_pairwise/sra/SAMEA5661365/2/scratch/keaton/plague-phylogeography/results/snippy_pairwise/sra/SAMEA5661364/2/scratch/keaton/plague-phylogeography/results/snippy_pairwise/sra/SAMEA5661363/2/scratch/keaton/plague-phylogeography/results/snippy_pairwise/sra/SAMEA5661360/2/scratch/keaton/plague-phylogeography/results/snippy_pairwise/sra/SAMEA5054093/2/scratch/keaton/plague-phylogeography/results/snippy_pairwise/sra/SAMEA5054092/2/scratch/keaton/plague-phylogeography/results/snippy_pairwise/sra/SAMEA5054090/2/scratch/keaton/plague-phylogeography/results/snippy_pairwise/sra/SAMEA5054089/2/scratch/keaton/plague-phylogeography/results/snippy_pairwise/sra/SAMEA104233048/2/scratch/keaton/plague-phylogeography/results/snippy_pairwise/sra/SAMEA104233050/2/scratch/keaton/plague-phylogeography/results/snippy_pairwise/sra/SAMEA104233049/2/scratch/keaton/plague-phylogeography/results/snippy_pairwise/sra/SAMEA104233047/2/scratch/keaton/plague-phylogeography/results/snippy_pairwise/sra/SAMEA104233046/2/scratch/keaton/plague-phylogeography/results/snippy_pairwise/sra/SAMEA104488961/2/scratch/keaton/plague-phylogeography/results/snippy_pairwise/sra/SAMEA4354665/2/scratch/keaton/plague-phylogeography/results/snippy_pairwise/sra/SAMEA3937654/2/scratch/keaton/plague-phylogeography/results/snippy_pairwise/sra/SAMEA3937653/2/scratch/keaton/plague-phylogeography/results/snippy_pairwise/sra/SAMEA3713715/2/scratch/keaton/plague-phylogeography/results/snippy_pairwise/sra/SAMEA3713714/2/scratch/keaton/plague-phylogeography/results/snippy_pairwise/sra/SAMEA3713713/2/scratch/keaton/plague-phylogeography/results/snippy_pairwise/sra/SAMEA3713712/2/scratch/keaton/plague-phylogeography/results/snippy_pairwise/sra/SAMEA3713711/2/scratch/keaton/plague-phylogeography/results/snippy_pairwise/sra/SAMN00715800/2/scratch/keaton/plague-phylogeography/results/snippy_pairwise/sra/SAMEA3541827/2/scratch/keaton/plague-phylogeography/results/snippy_pairwise/sra/SAMEA3541826/2/scratch/keaton/plague-phylogeography/results/snippy_pairwise/sra/SAMEA1061800/2/scratch/keaton/plague-phylogeography/results/snippy_pairwise/local/IP579/2/scratch/keaton/plague-phylogeography/results/snippy_pairwise/local/IP283/2/scratch/keaton/plague-phylogeography/results/snippy_pairwise/local/IP562/2/scratch/keaton/plague-phylogeography/results/snippy_pairwise/local/IP542/2/scratch/keaton/plague-phylogeography/results/snippy_pairwise/local/IP543/2/scratch/keaton/plague-phylogeography/results/snippy_pairwise/local/IP557
General Statistics
Showing 539/539 rows and 11/17 columns.| Sample Name | % GC | ≥ 3X | ≥ 10X | Median cov | Mean cov | M Aligned | Error rate | Variant SNP | Variant INS | Variant DEL | Variant COMPLEX |
|---|---|---|---|---|---|---|---|---|---|---|---|
| GCA_000006645.1_ASM664v1_genomic | 48% | 93.7% | 92.9% | 20.0X | 18.6X | 0.4 | 0.04% | 249 | 94 | 70 | 9 |
| GCA_000007885.1_ASM788v1_genomic | 48% | 94.7% | 93.8% | 20.0X | 18.7X | 0.4 | 0.07% | 486 | 132 | 118 | 9 |
| GCA_000013805.1_ASM1380v1_genomic | 48% | 92.0% | 91.2% | 20.0X | 18.2X | 0.4 | 0.04% | 205 | 80 | 58 | 4 |
| GCA_000013825.1_ASM1382v1_genomic | 48% | 95.4% | 94.5% | 20.0X | 18.9X | 0.4 | 0.04% | 227 | 71 | 92 | 3 |
| GCA_000016445.1_ASM1644v1_genomic | 48% | 93.3% | 92.4% | 20.0X | 18.5X | 0.4 | 0.08% | 692 | 135 | 157 | 11 |
| GCA_000022805.1_ASM2280v1_genomic | 48% | 96.1% | 95.3% | 20.0X | 19.0X | 0.4 | 0.03% | 160 | 153 | 102 | 9 |
| GCA_000022825.1_ASM2282v1_genomic | 48% | 96.1% | 95.3% | 20.0X | 19.0X | 0.4 | 0.03% | 181 | 200 | 161 | 18 |
| GCA_000022845.1_ASM2284v1_genomic | 48% | 93.1% | 92.4% | 20.0X | 18.5X | 0.4 | 0.02% | 84 | 58 | 26 | 0 |
| GCA_000168235.2_ASM16823v2_genomic | 48% | 95.9% | 95.0% | 20.0X | 19.1X | 0.4 | 0.01% | 67 | 25 | 30 | 1 |
| GCA_000169615.1_ASM16961v1_genomic | 48% | 92.8% | 91.8% | 20.0X | 18.4X | 0.4 | 0.04% | 238 | 65 | 93 | 2 |
| GCA_000169635.1_ASM16963v1_genomic | 48% | 96.0% | 95.3% | 20.0X | 19.5X | 0.4 | 0.01% | 72 | 26 | 43 | 13 |
| GCA_000169655.1_ASM16965v1_genomic | 48% | 92.8% | 92.0% | 20.0X | 18.4X | 0.4 | 0.04% | 207 | 83 | 72 | 4 |
| GCA_000169675.1_ASM16967v1_genomic | 48% | 95.6% | 94.8% | 20.0X | 19.0X | 0.4 | 0.04% | 155 | 69 | 49 | 4 |
| GCA_000169695.1_ASM16969v1_genomic | 48% | 95.8% | 95.0% | 20.0X | 19.0X | 0.4 | 0.03% | 88 | 50 | 52 | 4 |
| GCA_000170275.1_ASM17027v1_genomic | 48% | 95.6% | 94.8% | 20.0X | 19.0X | 0.4 | 0.02% | 71 | 34 | 35 | 1 |
| GCA_000181455.2_ASM18145v2_genomic | 48% | 96.4% | 95.7% | 20.0X | 19.1X | 0.4 | 0.01% | 33 | 18 | 12 | 0 |
| GCA_000182485.1_ASM18248v1_genomic | 48% | 92.0% | 91.2% | 20.0X | 18.2X | 0.4 | 0.04% | 213 | 82 | 62 | 8 |
| GCA_000182505.1_ASM18250v1_genomic | 48% | 94.2% | 93.4% | 20.0X | 18.7X | 0.4 | 0.02% | 49 | 27 | 22 | 4 |
| GCA_000182525.1_ASM18252v1_genomic | 48% | 94.9% | 94.1% | 20.0X | 18.8X | 0.4 | 0.02% | 79 | 26 | 24 | 2 |
| GCA_000182545.1_ASM18254v1_genomic | 48% | 94.8% | 93.9% | 20.0X | 18.8X | 0.4 | 0.06% | 419 | 173 | 108 | 7 |
| GCA_000182705.1_ASM18270v1_genomic | 48% | 93.1% | 92.3% | 20.0X | 18.4X | 0.4 | 0.06% | 263 | 86 | 899 | 47 |
| GCA_000186725.1_ASM18672v1_genomic | 48% | 93.4% | 92.6% | 20.0X | 18.5X | 0.4 | 0.05% | 462 | 129 | 129 | 7 |
| GCA_000222975.1_ASM22297v1_genomic | 48% | 92.9% | 92.2% | 20.0X | 18.4X | 0.4 | 0.01% | 48 | 15 | 20 | 2 |
| GCA_000255735.1_ASM25573v1_genomic | 48% | 94.4% | 93.6% | 20.0X | 18.7X | 0.4 | 0.01% | 32 | 16 | 16 | 2 |
| GCA_000255755.1_ASM25575v1_genomic | 48% | 94.2% | 93.3% | 20.0X | 18.6X | 0.4 | 0.01% | 36 | 71 | 79 | 4 |
| GCA_000255775.1_ASM25577v1_genomic | 48% | 94.4% | 93.6% | 20.0X | 18.7X | 0.4 | 0.01% | 29 | 49 | 40 | 1 |
| GCA_000255795.1_ASM25579v1_genomic | 48% | 94.0% | 92.9% | 20.0X | 18.6X | 0.4 | 0.01% | 31 | 76 | 85 | 0 |
| GCA_000255815.1_ASM25581v1_genomic | 48% | 93.4% | 92.5% | 20.0X | 18.5X | 0.4 | 0.01% | 35 | 19 | 22 | 0 |
| GCA_000255835.1_ASM25583v1_genomic | 48% | 94.0% | 93.1% | 20.0X | 18.6X | 0.4 | 0.01% | 41 | 43 | 58 | 2 |
| GCA_000255855.1_ASM25585v1_genomic | 48% | 94.4% | 93.4% | 20.0X | 18.7X | 0.4 | 0.02% | 48 | 49 | 239 | 5 |
| GCA_000255875.1_ASM25587v1_genomic | 48% | 94.3% | 93.3% | 20.0X | 18.6X | 0.4 | 0.01% | 41 | 70 | 60 | 0 |
| GCA_000255895.1_ASM25589v1_genomic | 48% | 94.6% | 93.7% | 20.0X | 18.7X | 0.4 | 0.01% | 42 | 49 | 71 | 1 |
| GCA_000268325.1_ASM26832v1_genomic | 48% | 94.4% | 92.5% | 20.0X | 18.5X | 0.4 | 0.02% | 123 | 21 | 22 | 3 |
| GCA_000268345.1_ASM26834v1_genomic | 48% | 94.6% | 93.1% | 20.0X | 18.6X | 0.4 | 0.01% | 100 | 24 | 22 | 6 |
| GCA_000268365.1_ASM26836v1_genomic | 48% | 94.7% | 93.0% | 20.0X | 18.6X | 0.4 | 0.02% | 104 | 30 | 20 | 33 |
| GCA_000268385.1_ASM26838v1_genomic | 48% | 94.7% | 93.2% | 20.0X | 18.6X | 0.4 | 0.01% | 75 | 26 | 19 | 2 |
| GCA_000268405.1_ASM26840v1_genomic | 48% | 94.7% | 93.0% | 20.0X | 18.6X | 0.4 | 0.02% | 100 | 28 | 19 | 18 |
| GCA_000268425.1_ASM26842v1_genomic | 48% | 94.6% | 92.8% | 20.0X | 18.5X | 0.4 | 0.01% | 87 | 26 | 22 | 2 |
| GCA_000268445.1_ASM26844v1_genomic | 48% | 94.6% | 92.8% | 20.0X | 18.5X | 0.4 | 0.01% | 89 | 33 | 20 | 3 |
| GCA_000268465.1_ASM26846v1_genomic | 48% | 94.6% | 92.7% | 20.0X | 18.5X | 0.4 | 0.01% | 93 | 25 | 18 | 2 |
| GCA_000268485.1_ASM26848v1_genomic | 49% | 93.1% | 90.8% | 20.0X | 18.1X | 0.4 | 0.01% | 64 | 23 | 17 | 0 |
| GCA_000268485.2_ASM26848v2_genomic | 49% | 93.1% | 90.8% | 20.0X | 18.1X | 0.4 | 0.01% | 64 | 23 | 17 | 0 |
| GCA_000268505.1_ASM26850v1_genomic | 48% | 94.7% | 93.0% | 20.0X | 18.6X | 0.4 | 0.01% | 88 | 25 | 20 | 2 |
| GCA_000268525.1_ASM26852v1_genomic | 48% | 91.1% | 89.3% | 20.0X | 17.8X | 0.3 | 0.01% | 88 | 17 | 17 | 6 |
| GCA_000268545.1_ASM26854v1_genomic | 48% | 94.5% | 92.6% | 20.0X | 18.5X | 0.4 | 0.01% | 89 | 24 | 18 | 3 |
| GCA_000268565.1_ASM26856v1_genomic | 48% | 94.2% | 91.7% | 20.0X | 18.3X | 0.4 | 0.02% | 123 | 22 | 21 | 7 |
| GCA_000268585.1_ASM26858v1_genomic | 48% | 94.7% | 92.9% | 20.0X | 18.6X | 0.4 | 0.01% | 108 | 29 | 21 | 2 |
| GCA_000268605.1_ASM26860v1_genomic | 48% | 94.5% | 92.4% | 20.0X | 18.5X | 0.4 | 0.01% | 62 | 31 | 20 | 2 |
| GCA_000268625.1_ASM26862v1_genomic | 48% | 94.8% | 93.1% | 20.0X | 18.6X | 0.4 | 0.01% | 79 | 27 | 19 | 3 |
| GCA_000268645.1_ASM26864v1_genomic | 48% | 94.7% | 93.0% | 20.0X | 18.6X | 0.4 | 0.02% | 77 | 28 | 17 | 24 |
| GCA_000268665.1_ASM26866v1_genomic | 48% | 94.7% | 92.8% | 20.0X | 18.5X | 0.4 | 0.02% | 107 | 51 | 19 | 21 |
| GCA_000268685.1_ASM26868v1_genomic | 48% | 94.7% | 93.2% | 20.0X | 18.6X | 0.4 | 0.02% | 107 | 21 | 20 | 21 |
| GCA_000268705.1_ASM26870v1_genomic | 48% | 94.5% | 92.7% | 20.0X | 18.5X | 0.4 | 0.01% | 77 | 27 | 19 | 2 |
| GCA_000268725.1_ASM26872v1_genomic | 48% | 94.6% | 92.9% | 20.0X | 18.5X | 0.4 | 0.02% | 125 | 26 | 21 | 6 |
| GCA_000268725.2_ASM26872v2_genomic | 48% | 94.6% | 92.9% | 20.0X | 18.5X | 0.4 | 0.02% | 125 | 26 | 21 | 6 |
| GCA_000268745.1_ASM26874v1_genomic | 48% | 94.7% | 93.2% | 20.0X | 18.6X | 0.4 | 0.02% | 94 | 31 | 20 | 3 |
| GCA_000268765.1_ASM26876v1_genomic | 48% | 94.4% | 92.4% | 20.0X | 18.5X | 0.4 | 0.01% | 80 | 27 | 19 | 3 |
| GCA_000268785.1_ASM26878v1_genomic | 48% | 94.2% | 91.9% | 20.0X | 18.4X | 0.4 | 0.01% | 90 | 29 | 18 | 2 |
| GCA_000268805.1_ASM26880v1_genomic | 49% | 92.7% | 88.2% | 20.0X | 17.6X | 0.3 | 0.01% | 71 | 21 | 12 | 3 |
| GCA_000268805.2_ASM26880v2_genomic | 49% | 92.7% | 88.2% | 20.0X | 17.6X | 0.3 | 0.01% | 71 | 21 | 12 | 3 |
| GCA_000268825.1_ASM26882v1_genomic | 48% | 94.7% | 93.1% | 20.0X | 18.6X | 0.4 | 0.02% | 94 | 26 | 18 | 5 |
| GCA_000268845.1_ASM26884v1_genomic | 48% | 94.4% | 92.3% | 20.0X | 18.4X | 0.4 | 0.02% | 83 | 34 | 19 | 41 |
| GCA_000268865.1_ASM26886v1_genomic | 48% | 93.5% | 90.7% | 20.0X | 18.1X | 0.4 | 0.01% | 86 | 25 | 17 | 3 |
| GCA_000268865.2_ASM26886v2_genomic | 48% | 93.5% | 90.7% | 20.0X | 18.1X | 0.4 | 0.01% | 86 | 25 | 17 | 3 |
| GCA_000268885.1_ASM26888v1_genomic | 48% | 94.4% | 92.4% | 20.0X | 18.5X | 0.4 | 0.01% | 83 | 23 | 19 | 3 |
| GCA_000268905.1_ASM26890v1_genomic | 48% | 94.7% | 93.0% | 20.0X | 18.6X | 0.4 | 0.01% | 89 | 28 | 19 | 1 |
| GCA_000268925.1_ASM26892v1_genomic | 48% | 94.6% | 92.8% | 20.0X | 18.5X | 0.4 | 0.02% | 99 | 30 | 18 | 27 |
| GCA_000268945.1_ASM26894v1_genomic | 48% | 94.0% | 90.6% | 20.0X | 18.1X | 0.3 | 0.02% | 83 | 27 | 20 | 8 |
| GCA_000268965.1_ASM26896v1_genomic | 48% | 94.6% | 93.0% | 20.0X | 18.6X | 0.4 | 0.02% | 94 | 30 | 37 | 24 |
| GCA_000268985.1_ASM26898v1_genomic | 48% | 91.3% | 89.7% | 20.0X | 17.9X | 0.3 | 0.01% | 74 | 14 | 15 | 2 |
| GCA_000269005.1_ASM26900v1_genomic | 48% | 91.2% | 89.3% | 20.0X | 17.8X | 0.3 | 0.01% | 64 | 15 | 14 | 5 |
| GCA_000269025.1_ASM26902v1_genomic | 48% | 91.3% | 89.8% | 20.0X | 17.9X | 0.3 | 0.01% | 102 | 61 | 32 | 22 |
| GCA_000269045.1_ASM26904v1_genomic | 48% | 94.4% | 92.0% | 20.0X | 18.4X | 0.4 | 0.01% | 98 | 31 | 19 | 0 |
| GCA_000269065.1_ASM26906v1_genomic | 48% | 94.4% | 92.8% | 20.0X | 18.5X | 0.4 | 0.02% | 145 | 26 | 20 | 36 |
| GCA_000269085.1_ASM26908v1_genomic | 48% | 94.4% | 92.6% | 20.0X | 18.5X | 0.4 | 0.02% | 87 | 31 | 20 | 3 |
| GCA_000269105.1_ASM26910v1_genomic | 48% | 94.7% | 92.9% | 20.0X | 18.5X | 0.4 | 0.02% | 83 | 30 | 19 | 4 |
| GCA_000269125.1_ASM26912v1_genomic | 48% | 94.7% | 93.1% | 20.0X | 18.6X | 0.4 | 0.01% | 69 | 28 | 19 | 3 |
| GCA_000269145.1_ASM26914v1_genomic | 48% | 94.6% | 92.7% | 20.0X | 18.5X | 0.4 | 0.02% | 86 | 28 | 20 | 3 |
| GCA_000269165.1_ASM26916v1_genomic | 48% | 94.6% | 92.9% | 20.0X | 18.5X | 0.4 | 0.02% | 91 | 28 | 20 | 2 |
| GCA_000269185.1_ASM26918v1_genomic | 48% | 94.6% | 92.8% | 20.0X | 18.5X | 0.4 | 0.02% | 80 | 29 | 18 | 2 |
| GCA_000269205.1_ASM26920v1_genomic | 48% | 94.4% | 92.6% | 20.0X | 18.5X | 0.4 | 0.02% | 94 | 30 | 20 | 2 |
| GCA_000269225.1_ASM26922v1_genomic | 48% | 94.5% | 92.6% | 20.0X | 18.5X | 0.4 | 0.02% | 135 | 27 | 20 | 2 |
| GCA_000269245.1_ASM26924v1_genomic | 48% | 94.1% | 92.0% | 20.0X | 18.4X | 0.4 | 0.02% | 91 | 28 | 19 | 19 |
| GCA_000269265.1_ASM26926v1_genomic | 48% | 94.6% | 92.5% | 20.0X | 18.5X | 0.4 | 0.02% | 123 | 31 | 18 | 34 |
| GCA_000269285.1_ASM26928v1_genomic | 48% | 94.6% | 93.0% | 20.0X | 18.6X | 0.4 | 0.02% | 111 | 28 | 20 | 3 |
| GCA_000269285.2_ASM26928v2_genomic | 48% | 94.6% | 93.0% | 20.0X | 18.6X | 0.4 | 0.02% | 111 | 28 | 20 | 3 |
| GCA_000269305.1_ASM26930v1_genomic | 48% | 94.8% | 93.2% | 20.0X | 18.6X | 0.4 | 0.01% | 99 | 29 | 20 | 3 |
| GCA_000269325.1_ASM26932v1_genomic | 48% | 94.6% | 92.8% | 20.0X | 18.5X | 0.4 | 0.02% | 73 | 30 | 20 | 1 |
| GCA_000269345.1_ASM26934v1_genomic | 48% | 94.3% | 91.9% | 20.0X | 18.4X | 0.4 | 0.02% | 99 | 27 | 19 | 9 |
| GCA_000269365.1_ASM26936v1_genomic | 48% | 94.6% | 92.8% | 20.0X | 18.5X | 0.4 | 0.02% | 142 | 28 | 20 | 5 |
| GCA_000269385.1_ASM26938v1_genomic | 49% | 91.3% | 86.9% | 20.0X | 17.3X | 0.3 | 0.02% | 79 | 44 | 18 | 19 |
| GCA_000269405.1_ASM26940v1_genomic | 48% | 94.3% | 91.9% | 20.0X | 18.4X | 0.4 | 0.02% | 122 | 25 | 22 | 4 |
| GCA_000269425.1_ASM26942v1_genomic | 48% | 94.6% | 92.6% | 20.0X | 18.5X | 0.4 | 0.01% | 67 | 27 | 19 | 3 |
| GCA_000269445.1_ASM26944v1_genomic | 48% | 94.7% | 93.2% | 20.0X | 18.6X | 0.4 | 0.02% | 94 | 29 | 19 | 4 |
| GCA_000269465.1_ASM26946v1_genomic | 48% | 94.6% | 93.0% | 20.0X | 18.6X | 0.4 | 0.02% | 127 | 28 | 40 | 36 |
| GCA_000269485.1_ASM26948v1_genomic | 48% | 92.9% | 89.8% | 20.0X | 17.9X | 0.3 | 0.01% | 90 | 22 | 16 | 3 |
| GCA_000275685.1_ASM27568v1_genomic | 48% | 94.2% | 93.4% | 20.0X | 18.6X | 0.4 | 0.04% | 226 | 82 | 66 | 4 |
| GCA_000311885.1_ASM31188v1_genomic | 48% | 93.0% | 92.3% | 20.0X | 18.4X | 0.4 | 0.00% | 63 | 0 | 0 | 1 |
| GCA_000320425.1_ASM32042v1_genomic | 49% | 88.6% | 84.8% | 20.0X | 16.9X | 0.3 | 0.04% | 330 | 84 | 70 | 2 |
| GCA_000320445.1_ASM32044v1_genomic | 49% | 89.6% | 86.0% | 20.0X | 17.2X | 0.3 | 0.02% | 168 | 49 | 35 | 1 |
| GCA_000320465.1_ASM32046v1_genomic | 48% | 90.0% | 87.3% | 20.0X | 17.4X | 0.3 | 0.02% | 132 | 46 | 35 | 0 |
| GCA_000323185.1_ASM32318v1_genomic | 48% | 90.1% | 86.4% | 20.0X | 17.3X | 0.3 | 0.03% | 239 | 58 | 54 | 1 |
| GCA_000323205.1_ASM32320v1_genomic | 48% | 91.5% | 88.0% | 20.0X | 17.6X | 0.3 | 0.03% | 214 | 58 | 52 | 0 |
| GCA_000323225.1_ASM32322v1_genomic | 48% | 91.6% | 88.8% | 20.0X | 17.7X | 0.3 | 0.03% | 213 | 59 | 53 | 0 |
| GCA_000323245.1_ASM32324v1_genomic | 48% | 87.0% | 77.7% | 20.0X | 15.5X | 0.3 | 0.03% | 186 | 62 | 51 | 6 |
| GCA_000323285.1_ASM32328v1_genomic | 48% | 92.4% | 89.9% | 20.0X | 18.0X | 0.3 | 0.01% | 75 | 29 | 24 | 0 |
| GCA_000323305.1_ASM32330v1_genomic | 49% | 88.7% | 85.0% | 20.0X | 17.0X | 0.3 | 0.02% | 161 | 52 | 34 | 0 |
| GCA_000323325.1_ASM32332v1_genomic | 48% | 91.3% | 87.0% | 20.0X | 17.4X | 0.3 | 0.02% | 166 | 52 | 38 | 1 |
| GCA_000323345.1_ASM32334v1_genomic | 49% | 88.9% | 84.4% | 20.0X | 16.8X | 0.3 | 0.02% | 163 | 45 | 39 | 2 |
| GCA_000323365.1_ASM32336v1_genomic | 48% | 91.7% | 88.7% | 20.0X | 17.7X | 0.3 | 0.03% | 228 | 58 | 55 | 0 |
| GCA_000323385.1_ASM32338v1_genomic | 48% | 90.5% | 83.4% | 20.0X | 16.6X | 0.3 | 0.02% | 132 | 41 | 31 | 8 |
| GCA_000323405.1_ASM32340v1_genomic | 48% | 91.3% | 88.2% | 20.0X | 17.6X | 0.3 | 0.02% | 144 | 46 | 33 | 0 |
| GCA_000323425.1_ASM32342v1_genomic | 48% | 91.5% | 87.6% | 20.0X | 17.5X | 0.3 | 0.03% | 248 | 68 | 53 | 2 |
| GCA_000323445.1_ASM32344v1_genomic | 48% | 91.6% | 88.1% | 20.0X | 17.6X | 0.3 | 0.01% | 81 | 33 | 24 | 0 |
| GCA_000323465.1_ASM32346v1_genomic | 48% | 86.6% | 83.3% | 20.0X | 16.6X | 0.3 | 0.02% | 172 | 53 | 39 | 2 |
| GCA_000323485.1_ASM32348v1_genomic | 48% | 90.3% | 86.5% | 20.0X | 17.3X | 0.3 | 0.06% | 576 | 95 | 115 | 7 |
| GCA_000323505.1_ASM32350v1_genomic | 48% | 92.4% | 89.8% | 20.0X | 17.9X | 0.3 | 0.02% | 139 | 44 | 38 | 0 |
| GCA_000323525.1_ASM32352v1_genomic | 48% | 90.8% | 85.7% | 20.0X | 17.1X | 0.3 | 0.02% | 136 | 51 | 27 | 1 |
| GCA_000323545.1_ASM32354v1_genomic | 48% | 90.7% | 86.9% | 20.0X | 17.3X | 0.3 | 0.01% | 72 | 34 | 24 | 0 |
| GCA_000323565.1_ASM32356v1_genomic | 48% | 88.2% | 84.4% | 20.0X | 16.8X | 0.3 | 0.03% | 183 | 58 | 46 | 0 |
| GCA_000323585.1_ASM32358v1_genomic | 48% | 90.1% | 87.0% | 20.0X | 17.4X | 0.3 | 0.03% | 182 | 52 | 42 | 0 |
| GCA_000323605.1_ASM32360v1_genomic | 48% | 92.1% | 89.4% | 20.0X | 17.8X | 0.3 | 0.01% | 81 | 31 | 21 | 0 |
| GCA_000323625.1_ASM32362v1_genomic | 48% | 90.1% | 85.4% | 20.0X | 17.0X | 0.3 | 0.04% | 333 | 89 | 74 | 4 |
| GCA_000323645.1_ASM32364v1_genomic | 48% | 88.7% | 85.5% | 20.0X | 17.1X | 0.3 | 0.03% | 180 | 57 | 43 | 1 |
| GCA_000323665.1_ASM32366v1_genomic | 49% | 85.5% | 81.2% | 20.0X | 16.2X | 0.3 | 0.03% | 223 | 50 | 46 | 2 |
| GCA_000323685.1_ASM32368v1_genomic | 49% | 88.6% | 84.8% | 20.0X | 16.9X | 0.3 | 0.02% | 85 | 33 | 25 | 0 |
| GCA_000323705.1_ASM32370v1_genomic | 48% | 91.6% | 88.7% | 20.0X | 17.7X | 0.3 | 0.02% | 139 | 47 | 33 | 0 |
| GCA_000323725.1_ASM32372v1_genomic | 48% | 89.2% | 83.8% | 20.0X | 16.7X | 0.3 | 0.03% | 179 | 65 | 49 | 7 |
| GCA_000323745.1_ASM32374v1_genomic | 49% | 87.2% | 82.3% | 20.0X | 16.4X | 0.3 | 0.01% | 80 | 23 | 15 | 1 |
| GCA_000323765.1_ASM32376v1_genomic | 48% | 92.5% | 89.2% | 20.0X | 17.8X | 0.3 | 0.02% | 143 | 51 | 28 | 0 |
| GCA_000323785.1_ASM32378v1_genomic | 48% | 92.5% | 89.3% | 20.0X | 17.8X | 0.3 | 0.01% | 83 | 26 | 22 | 1 |
| GCA_000323805.1_ASM32380v1_genomic | 48% | 91.5% | 87.1% | 20.0X | 17.4X | 0.3 | 0.02% | 84 | 32 | 25 | 0 |
| GCA_000323825.1_ASM32382v1_genomic | 48% | 89.0% | 85.3% | 20.0X | 17.0X | 0.3 | 0.02% | 76 | 31 | 27 | 0 |
| GCA_000323845.1_ASM32384v1_genomic | 48% | 89.7% | 84.8% | 20.0X | 16.9X | 0.3 | 0.05% | 557 | 68 | 81 | 7 |
| GCA_000323865.1_ASM32386v1_genomic | 49% | 89.2% | 84.7% | 20.0X | 16.9X | 0.3 | 0.01% | 74 | 34 | 25 | 0 |
| GCA_000323885.1_ASM32388v1_genomic | 48% | 90.5% | 87.1% | 20.0X | 17.4X | 0.3 | 0.01% | 80 | 33 | 23 | 1 |
| GCA_000323905.1_ASM32390v1_genomic | 48% | 90.9% | 86.2% | 20.0X | 17.2X | 0.3 | 0.02% | 169 | 58 | 36 | 3 |
| GCA_000323925.1_ASM32392v1_genomic | 48% | 89.5% | 85.6% | 20.0X | 17.1X | 0.3 | 0.02% | 167 | 53 | 38 | 0 |
| GCA_000323945.1_ASM32394v1_genomic | 48% | 89.5% | 79.5% | 20.0X | 15.8X | 0.3 | 0.03% | 190 | 52 | 47 | 0 |
| GCA_000323965.1_ASM32396v1_genomic | 49% | 89.8% | 86.1% | 20.0X | 17.2X | 0.3 | 0.02% | 70 | 31 | 27 | 2 |
| GCA_000323985.1_ASM32398v1_genomic | 49% | 85.6% | 80.0% | 20.0X | 16.0X | 0.3 | 0.01% | 45 | 14 | 13 | 2 |
| GCA_000324005.1_ASM32400v1_genomic | 48% | 88.0% | 84.4% | 20.0X | 16.8X | 0.3 | 0.03% | 181 | 54 | 48 | 1 |
| GCA_000324025.1_ASM32402v1_genomic | 48% | 91.9% | 89.2% | 20.0X | 17.8X | 0.3 | 0.03% | 188 | 56 | 50 | 1 |
| GCA_000324045.1_ASM32404v1_genomic | 48% | 90.7% | 85.6% | 20.0X | 17.1X | 0.3 | 0.05% | 402 | 95 | 94 | 9 |
| GCA_000324065.1_ASM32406v1_genomic | 49% | 85.9% | 81.1% | 20.0X | 16.2X | 0.3 | 0.02% | 125 | 38 | 29 | 4 |
| GCA_000324085.1_ASM32408v1_genomic | 49% | 86.8% | 82.0% | 20.0X | 16.4X | 0.3 | 0.02% | 79 | 33 | 25 | 2 |
| GCA_000324105.1_ASM32410v1_genomic | 49% | 88.3% | 84.1% | 20.0X | 16.8X | 0.3 | 0.01% | 77 | 24 | 24 | 4 |
| GCA_000324125.1_ASM32412v1_genomic | 48% | 91.2% | 87.2% | 20.0X | 17.4X | 0.3 | 0.02% | 174 | 49 | 41 | 1 |
| GCA_000324145.1_ASM32414v1_genomic | 48% | 92.3% | 89.4% | 20.0X | 17.8X | 0.3 | 0.02% | 173 | 54 | 42 | 2 |
| GCA_000324165.1_ASM32416v1_genomic | 48% | 90.9% | 87.4% | 20.0X | 17.5X | 0.3 | 0.02% | 135 | 46 | 36 | 0 |
| GCA_000324185.1_ASM32418v1_genomic | 48% | 90.0% | 86.4% | 20.0X | 17.2X | 0.3 | 0.03% | 238 | 56 | 53 | 1 |
| GCA_000324205.1_ASM32420v1_genomic | 48% | 91.8% | 88.1% | 20.0X | 17.6X | 0.3 | 0.03% | 258 | 62 | 50 | 0 |
| GCA_000324225.1_ASM32422v1_genomic | 48% | 92.2% | 89.4% | 20.0X | 17.9X | 0.3 | 0.03% | 230 | 62 | 55 | 0 |
| GCA_000324245.1_ASM32424v1_genomic | 49% | 89.6% | 85.7% | 20.0X | 17.1X | 0.3 | 0.02% | 170 | 54 | 36 | 2 |
| GCA_000324265.1_ASM32426v1_genomic | 48% | 88.4% | 85.2% | 20.0X | 17.0X | 0.3 | 0.02% | 182 | 60 | 36 | 0 |
| GCA_000324285.1_ASM32428v1_genomic | 49% | 87.0% | 82.0% | 20.0X | 16.4X | 0.3 | 0.01% | 67 | 26 | 16 | 2 |
| GCA_000324305.1_ASM32430v1_genomic | 48% | 87.9% | 84.2% | 20.0X | 16.8X | 0.3 | 0.03% | 175 | 55 | 37 | 1 |
| GCA_000324325.1_ASM32432v1_genomic | 49% | 85.4% | 79.6% | 20.0X | 15.9X | 0.3 | 0.02% | 122 | 38 | 22 | 4 |
| GCA_000324345.1_ASM32434v1_genomic | 48% | 89.8% | 87.1% | 20.0X | 17.4X | 0.3 | 0.03% | 247 | 60 | 53 | 1 |
| GCA_000324365.1_ASM32436v1_genomic | 48% | 91.2% | 87.5% | 20.0X | 17.5X | 0.3 | 0.01% | 82 | 28 | 24 | 0 |
| GCA_000324385.1_ASM32438v1_genomic | 48% | 89.2% | 80.8% | 20.0X | 16.1X | 0.3 | 0.02% | 67 | 35 | 26 | 4 |
| GCA_000324405.1_ASM32440v1_genomic | 48% | 92.4% | 88.4% | 20.0X | 17.6X | 0.3 | 0.01% | 85 | 27 | 26 | 0 |
| GCA_000324425.1_ASM32442v1_genomic | 48% | 92.2% | 89.3% | 20.0X | 17.8X | 0.3 | 0.01% | 54 | 19 | 19 | 0 |
| GCA_000324445.1_ASM32444v1_genomic | 48% | 87.9% | 84.1% | 20.0X | 16.8X | 0.3 | 0.03% | 178 | 51 | 53 | 0 |
| GCA_000324465.1_ASM32446v1_genomic | 48% | 89.4% | 86.0% | 20.0X | 17.2X | 0.3 | 0.05% | 401 | 86 | 88 | 3 |
| GCA_000324485.1_ASM32448v1_genomic | 49% | 85.9% | 80.9% | 20.0X | 16.2X | 0.3 | 0.03% | 168 | 50 | 46 | 1 |
| GCA_000324505.1_ASM32450v1_genomic | 48% | 88.8% | 84.6% | 20.0X | 16.9X | 0.3 | 0.02% | 176 | 48 | 39 | 3 |
| GCA_000324525.1_ASM32452v1_genomic | 48% | 91.6% | 88.0% | 20.0X | 17.6X | 0.3 | 0.05% | 425 | 93 | 87 | 3 |
| GCA_000324545.1_ASM32454v1_genomic | 49% | 87.7% | 83.0% | 20.0X | 16.6X | 0.3 | 0.02% | 170 | 43 | 41 | 2 |
| GCA_000324565.1_ASM32456v1_genomic | 48% | 91.8% | 88.7% | 20.0X | 17.7X | 0.3 | 0.02% | 180 | 52 | 41 | 0 |
| GCA_000324585.1_ASM32458v1_genomic | 49% | 86.8% | 81.5% | 20.0X | 16.3X | 0.3 | 0.02% | 164 | 46 | 36 | 1 |
| GCA_000324605.1_ASM32460v1_genomic | 49% | 89.2% | 84.9% | 20.0X | 16.9X | 0.3 | 0.03% | 188 | 51 | 54 | 2 |
| GCA_000324625.1_ASM32462v1_genomic | 48% | 92.3% | 87.4% | 20.0X | 17.4X | 0.3 | 0.01% | 67 | 19 | 22 | 0 |
| GCA_000324645.1_ASM32464v1_genomic | 49% | 87.4% | 82.8% | 20.0X | 16.5X | 0.3 | 0.01% | 58 | 18 | 24 | 3 |
| GCA_000324665.1_ASM32466v1_genomic | 48% | 89.9% | 86.4% | 20.0X | 17.2X | 0.3 | 0.05% | 401 | 91 | 90 | 4 |
| GCA_000324685.1_ASM32468v1_genomic | 48% | 89.6% | 86.2% | 20.0X | 17.2X | 0.3 | 0.02% | 85 | 31 | 22 | 0 |
| GCA_000324705.1_ASM32470v1_genomic | 48% | 89.9% | 84.6% | 20.0X | 16.9X | 0.3 | 0.02% | 76 | 38 | 25 | 0 |
| GCA_000324725.1_ASM32472v1_genomic | 48% | 90.3% | 87.2% | 20.0X | 17.4X | 0.3 | 0.02% | 80 | 35 | 25 | 1 |
| GCA_000324745.1_ASM32474v1_genomic | 48% | 91.8% | 87.4% | 20.0X | 17.4X | 0.3 | 0.02% | 83 | 39 | 26 | 6 |
| GCA_000324765.1_ASM32476v1_genomic | 49% | 89.3% | 85.3% | 20.0X | 17.0X | 0.3 | 0.01% | 70 | 19 | 26 | 2 |
| GCA_000324785.1_ASM32478v1_genomic | 48% | 92.4% | 89.2% | 20.0X | 17.8X | 0.3 | 0.01% | 80 | 28 | 25 | 0 |
| GCA_000324805.2_EV76-CN_genomic | 48% | 89.0% | 87.3% | 20.0X | 17.4X | 0.3 | 0.03% | 172 | 14 | 41 | 13 |
| GCA_000324825.1_ASM32482v1_genomic | 48% | 90.7% | 86.1% | 20.0X | 17.2X | 0.3 | 0.01% | 49 | 15 | 13 | 4 |
| GCA_000324845.1_ASM32484v1_genomic | 48% | 92.5% | 88.8% | 20.0X | 17.7X | 0.3 | 0.01% | 80 | 24 | 24 | 0 |
| GCA_000324865.1_ASM32486v1_genomic | 49% | 87.9% | 82.9% | 20.0X | 16.5X | 0.3 | 0.01% | 58 | 19 | 18 | 2 |
| GCA_000324885.1_ASM32488v1_genomic | 48% | 91.6% | 88.7% | 20.0X | 17.7X | 0.3 | 0.02% | 170 | 54 | 41 | 0 |
| GCA_000324905.1_ASM32490v1_genomic | 48% | 92.0% | 89.3% | 20.0X | 17.8X | 0.3 | 0.02% | 175 | 53 | 42 | 0 |
| GCA_000324925.1_ASM32492v1_genomic | 48% | 87.3% | 84.3% | 20.0X | 16.8X | 0.3 | 0.07% | 681 | 96 | 133 | 5 |
| GCA_000324945.1_ASM32494v1_genomic | 49% | 84.8% | 80.2% | 20.0X | 16.0X | 0.3 | 0.02% | 169 | 27 | 33 | 3 |
| GCA_000324965.1_ASM32496v1_genomic | 48% | 90.7% | 87.5% | 20.0X | 17.5X | 0.3 | 0.02% | 174 | 52 | 41 | 1 |
| GCA_000324985.1_ASM32498v1_genomic | 48% | 89.1% | 84.9% | 20.0X | 16.9X | 0.3 | 0.02% | 177 | 54 | 40 | 1 |
| GCA_000325005.1_ASM32500v1_genomic | 48% | 91.5% | 87.3% | 20.0X | 17.4X | 0.3 | 0.03% | 184 | 55 | 51 | 1 |
| GCA_000325025.1_ASM32502v1_genomic | 49% | 89.7% | 85.6% | 20.0X | 17.1X | 0.3 | 0.03% | 187 | 51 | 50 | 1 |
| GCA_000325045.1_ASM32504v1_genomic | 49% | 87.8% | 83.7% | 20.0X | 16.7X | 0.3 | 0.03% | 189 | 56 | 52 | 0 |
| GCA_000325065.1_ASM32506v1_genomic | 48% | 91.2% | 86.8% | 20.0X | 17.3X | 0.3 | 0.03% | 193 | 55 | 56 | 0 |
| GCA_000325085.1_ASM32508v1_genomic | 48% | 91.6% | 86.1% | 20.0X | 17.2X | 0.3 | 0.03% | 199 | 58 | 50 | 1 |
| GCA_000325105.1_ASM32510v1_genomic | 48% | 89.8% | 86.1% | 20.0X | 17.2X | 0.3 | 0.03% | 181 | 51 | 44 | 1 |
| GCA_000325125.1_ASM32512v1_genomic | 48% | 92.3% | 88.4% | 20.0X | 17.6X | 0.3 | 0.02% | 196 | 48 | 41 | 1 |
| GCA_000325145.1_ASM32514v1_genomic | 48% | 89.0% | 85.9% | 20.0X | 17.1X | 0.3 | 0.03% | 178 | 61 | 45 | 0 |
| GCA_000325165.1_ASM32516v1_genomic | 48% | 89.2% | 84.9% | 20.0X | 16.9X | 0.3 | 0.01% | 78 | 27 | 22 | 1 |
| GCA_000325185.1_ASM32518v1_genomic | 48% | 89.8% | 85.9% | 20.0X | 17.1X | 0.3 | 0.05% | 394 | 84 | 90 | 3 |
| GCA_000325205.1_ASM32520v1_genomic | 48% | 91.7% | 88.9% | 20.0X | 17.7X | 0.3 | 0.02% | 172 | 55 | 47 | 0 |
| GCA_000325225.1_ASM32522v1_genomic | 49% | 89.1% | 85.0% | 20.0X | 17.0X | 0.3 | 0.02% | 144 | 42 | 26 | 0 |
| GCA_000325245.1_ASM32524v1_genomic | 48% | 90.3% | 86.3% | 20.0X | 17.2X | 0.3 | 0.02% | 169 | 44 | 35 | 0 |
| GCA_000325265.1_ASM32526v1_genomic | 48% | 87.8% | 84.4% | 20.0X | 16.9X | 0.3 | 0.02% | 151 | 43 | 36 | 0 |
| GCA_000325285.1_ASM32528v1_genomic | 49% | 87.4% | 83.0% | 20.0X | 16.6X | 0.3 | 0.02% | 151 | 39 | 31 | 2 |
| GCA_000325305.1_ASM32530v1_genomic | 49% | 90.0% | 86.3% | 20.0X | 17.2X | 0.3 | 0.02% | 160 | 48 | 36 | 2 |
| GCA_000325325.1_ASM32532v1_genomic | 49% | 88.8% | 84.7% | 20.0X | 16.9X | 0.3 | 0.03% | 182 | 48 | 50 | 0 |
| GCA_000325345.1_ASM32534v1_genomic | 49% | 88.3% | 83.6% | 20.0X | 16.7X | 0.3 | 0.03% | 178 | 55 | 55 | 2 |
| GCA_000325365.1_ASM32536v1_genomic | 48% | 90.8% | 86.1% | 20.0X | 17.2X | 0.3 | 0.01% | 72 | 28 | 28 | 3 |
| GCA_000325385.1_ASM32538v1_genomic | 48% | 86.8% | 80.4% | 20.0X | 16.0X | 0.3 | 0.01% | 68 | 26 | 24 | 2 |
| GCA_000325405.1_ASM32540v1_genomic | 49% | 86.7% | 81.4% | 20.0X | 16.2X | 0.3 | 0.01% | 59 | 18 | 18 | 4 |
| GCA_000325425.1_ASM32542v1_genomic | 48% | 92.4% | 89.4% | 20.0X | 17.9X | 0.3 | 0.01% | 58 | 20 | 26 | 0 |
| GCA_000325445.1_ASM32544v1_genomic | 49% | 87.5% | 83.1% | 20.0X | 16.6X | 0.3 | 0.01% | 58 | 24 | 21 | 0 |
| GCA_000325465.1_ASM32546v1_genomic | 48% | 92.5% | 88.6% | 20.0X | 17.7X | 0.3 | 0.01% | 81 | 22 | 19 | 1 |
| GCA_000325485.1_ASM32548v1_genomic | 49% | 85.4% | 81.1% | 20.0X | 16.2X | 0.3 | 0.01% | 55 | 19 | 20 | 1 |
| GCA_000382505.1_Yersinia_pestis_G1670E_assembly_genomic | 48% | 92.1% | 91.0% | 20.0X | 18.2X | 0.4 | 0.09% | 723 | 201 | 173 | 16 |
| GCA_000382525.1_Yersinia_pestis_G3768_assembly_genomic | 48% | 91.9% | 90.7% | 20.0X | 18.1X | 0.3 | 0.10% | ||||
| GCA_000382545.1_Yersinia_pestis_assembly_genomic | 48% | 92.3% | 91.3% | 20.0X | 18.2X | 0.4 | 0.08% | 704 | 142 | 237 | 8 |
| GCA_000475095.2_YP009_v2_genomic | 48% | 92.2% | 91.4% | 20.0X | 18.3X | 0.4 | 0.02% | 81 | 85 | 781 | 26 |
| GCA_000475115.2_YP113_v2_genomic | 48% | 93.6% | 92.9% | 20.0X | 18.6X | 0.4 | 0.01% | 78 | 60 | 264 | 14 |
| GCA_000475135.2_YPS03_v2_genomic | 48% | 95.3% | 94.6% | 20.0X | 18.9X | 0.4 | 0.03% | 264 | 405 | 357 | 46 |
| GCA_000475155.2_YP24H_v2_genomic | 48% | 92.2% | 91.5% | 20.0X | 18.3X | 0.4 | 0.02% | 75 | 336 | 379 | 36 |
| GCA_000590535.1_EV_NIIEG_genomic | 48% | 91.7% | 90.6% | 20.0X | 18.1X | 0.3 | 0.04% | 57 | 37 | 1397 | 8 |
| GCA_000705315.1_EDB10_058v1_genomic | 48% | 93.5% | 91.5% | 20.0X | 18.3X | 0.4 | 0.01% | 42 | 12 | 11 | 1 |
| GCA_000734805.1_ASM73480v1_genomic | 48% | 93.4% | 92.2% | 20.0X | 18.4X | 0.4 | 0.04% | 153 | 144 | 457 | 4 |
| GCA_000754785.1_YAU_genomic | 48% | 95.0% | 94.2% | 20.0X | 18.8X | 0.4 | 0.00% | 15 | 7 | 8 | 0 |
| GCA_000834235.1_ASM83423v1_genomic | 48% | 96.3% | 95.5% | 20.0X | 19.1X | 0.4 | 0.02% | 67 | 30 | 36 | 3 |
| GCA_000834275.1_ASM83427v1_genomic | 48% | 93.4% | 92.6% | 20.0X | 18.5X | 0.4 | 0.05% | 446 | 120 | 137 | 8 |
| GCA_000834315.1_ASM83431v1_genomic | 48% | 93.3% | 92.4% | 20.0X | 18.5X | 0.4 | 0.08% | 687 | 133 | 152 | 11 |
| GCA_000834335.1_ASM83433v1_genomic | 48% | 96.4% | 95.7% | 20.0X | 19.2X | 0.4 | 0.01% | 30 | 15 | 8 | 0 |
| GCA_000834495.1_ASM83449v1_genomic | 48% | 96.5% | 95.7% | 20.0X | 19.1X | 0.4 | 0.01% | 36 | 17 | 19 | 0 |
| GCA_000834755.1_ASM83475v1_genomic | 48% | 92.9% | 92.3% | 20.0X | 18.5X | 0.4 | 0.01% | 42 | 16 | 28 | 1 |
| GCA_000834775.1_ASM83477v1_genomic | 48% | 95.4% | 94.7% | 20.0X | 18.9X | 0.4 | 0.01% | 29 | 11 | 19 | 0 |
| GCA_000834825.1_ASM83482v1_genomic | 48% | 95.4% | 94.5% | 20.0X | 18.9X | 0.4 | 0.04% | 227 | 62 | 133 | 2 |
| GCA_000834885.1_ASM83488v1_genomic | 48% | 93.2% | 92.5% | 20.0X | 18.5X | 0.4 | 0.05% | 420 | 114 | 131 | 5 |
| GCA_000834905.1_ASM83490v1_genomic | 48% | 94.5% | 93.8% | 20.0X | 18.8X | 0.4 | 0.01% | 56 | 25 | 21 | 0 |
| GCA_000834925.1_ASM83492v1_genomic | 48% | 94.9% | 94.0% | 20.0X | 18.8X | 0.4 | 0.06% | 418 | 114 | 102 | 8 |
| GCA_000834985.1_ASM83498v1_genomic | 48% | 93.5% | 92.6% | 20.0X | 18.5X | 0.4 | 0.08% | 690 | 143 | 158 | 10 |
| GCA_000835005.1_ASM83500v1_genomic | 48% | 85.5% | 84.5% | 20.0X | 16.9X | 0.3 | 0.04% | 223 | 62 | 76 | 2 |
| GCA_000950935.1_ASM95093v1_genomic | 48% | 92.0% | 90.2% | 20.0X | 18.0X | 0.3 | 0.07% | 432 | 201 | 295 | 27 |
| GCA_000950945.1_ASM95094v1_genomic | 48% | 94.1% | 92.7% | 20.0X | 18.5X | 0.4 | 0.07% | 447 | 192 | 205 | 29 |
| GCA_000970105.1_ASM97010v1_genomic | 48% | 95.2% | 94.4% | 20.0X | 18.9X | 0.4 | 0.04% | 245 | 79 | 60 | 3 |
| GCA_000986995.1_YPES001-SEQ-2-ASM-1_genomic | 48% | 93.8% | 93.0% | 20.0X | 19.0X | 0.4 | 0.02% | 134 | 27 | 32 | 3 |
| GCA_001188325.1_YPY_1_genomic | 48% | 93.4% | 92.5% | 20.0X | 18.5X | 0.4 | 0.08% | 712 | 142 | 167 | 8 |
| GCA_001188335.1_DYA_1_genomic | 48% | 93.4% | 92.5% | 20.0X | 18.5X | 0.4 | 0.08% | ||||
| GCA_001188675.1_ASM118867v1_genomic | 48% | 94.8% | 94.1% | 20.0X | 18.8X | 0.4 | 0.03% | 161 | 62 | 42 | 3 |
| GCA_001188695.1_ASM118869v1_genomic | 48% | 93.5% | 92.6% | 20.0X | 18.5X | 0.4 | 0.08% | 702 | 143 | 166 | 12 |
| GCA_001188715.1_ASM118871v1_genomic | 48% | 93.5% | 92.7% | 20.0X | 18.5X | 0.4 | 0.08% | 705 | 128 | 154 | 11 |
| GCA_001188735.1_ASM118873v1_genomic | 48% | 93.1% | 92.3% | 20.0X | 18.5X | 0.4 | 0.05% | 254 | 93 | 79 | 6 |
| GCA_001188755.1_ASM118875v1_genomic | 48% | 92.2% | 91.4% | 20.0X | 18.2X | 0.4 | 0.08% | 698 | 134 | 164 | 12 |
| GCA_001188775.1_ASM118877v1_genomic | 48% | 93.5% | 92.6% | 20.0X | 18.5X | 0.4 | 0.09% | 707 | 140 | 164 | 12 |
| GCA_001188795.1_ASM118879v1_genomic | 48% | 93.5% | 92.6% | 20.0X | 18.5X | 0.4 | 0.08% | 708 | 146 | 167 | 10 |
| GCA_001188815.1_ASM118881v1_genomic | 48% | 93.1% | 92.3% | 20.0X | 18.4X | 0.4 | 0.04% | 249 | 75 | 65 | 4 |
| GCA_001188935.1_ASM118893v1_genomic | 48% | 93.5% | 92.6% | 20.0X | 18.5X | 0.4 | 0.09% | 698 | 146 | 163 | 12 |
| GCA_001261975.1_YPW_8_IHQD_genomic | 48% | 94.6% | 93.9% | 20.0X | 18.8X | 0.4 | 0.04% | 247 | 83 | 60 | 5 |
| GCA_001261985.1_YPW_3_IHQD_genomic | 48% | 94.1% | 93.3% | 20.0X | 18.7X | 0.4 | 0.01% | 57 | 20 | 39 | 0 |
| GCA_001293415.1_ASM129341v1_genomic | 48% | 94.3% | 93.5% | 20.0X | 18.7X | 0.4 | 0.00% | 14 | 8 | 7 | 0 |
| GCA_001294805.1_ASM129480v1_genomic | 48% | 93.6% | 92.5% | 20.0X | 18.5X | 0.4 | 0.07% | 451 | 149 | 344 | 10 |
| GCA_001294815.1_ASM129481v1_genomic | 48% | 92.6% | 91.6% | 20.0X | 18.3X | 0.4 | 0.09% | 689 | 224 | 200 | 17 |
| GCA_001294825.1_ASM129482v1_genomic | 48% | 91.8% | 90.8% | 20.0X | 18.1X | 0.4 | 0.08% | 608 | 157 | 293 | 6 |
| GCA_001294835.1_ASM129483v1_genomic | 48% | 94.4% | 93.5% | 20.0X | 18.7X | 0.4 | 0.07% | 423 | 141 | 309 | 14 |
| GCA_001294885.1_ASM129488v1_genomic | 48% | 92.4% | 91.4% | 20.0X | 18.3X | 0.4 | 0.07% | 477 | 193 | 309 | 13 |
| GCA_001294895.1_ASM129489v1_genomic | 48% | 92.1% | 90.8% | 20.0X | 18.1X | 0.4 | 0.08% | 415 | 341 | 514 | 27 |
| GCA_001294905.1_ASM129490v1_genomic | 48% | 92.6% | 91.6% | 20.0X | 18.3X | 0.4 | 0.09% | 675 | 180 | 372 | 12 |
| GCA_001294915.1_ASM129491v1_genomic | 48% | 92.6% | 91.6% | 20.0X | 18.3X | 0.4 | 0.09% | 682 | 185 | 320 | 10 |
| GCA_001294965.1_ASM129496v1_genomic | 48% | 93.2% | 92.2% | 20.0X | 18.4X | 0.4 | 0.07% | 404 | 149 | 299 | 12 |
| GCA_001294975.1_ASM129497v1_genomic | 48% | 93.7% | 92.5% | 20.0X | 18.5X | 0.4 | 0.07% | 452 | 213 | 283 | 12 |
| GCA_001294985.1_ASM129498v1_genomic | 48% | 92.6% | 91.6% | 20.0X | 18.3X | 0.4 | 0.09% | 683 | 180 | 453 | 10 |
| GCA_001295025.1_ASM129502v1_genomic | 48% | 94.4% | 93.5% | 20.0X | 18.7X | 0.4 | 0.07% | 408 | 155 | 297 | 11 |
| GCA_001295045.1_ASM129504v1_genomic | 48% | 92.6% | 91.7% | 20.0X | 18.3X | 0.4 | 0.09% | 682 | 173 | 301 | 9 |
| GCA_001295055.1_ASM129505v1_genomic | 48% | 92.7% | 91.7% | 20.0X | 18.3X | 0.4 | 0.09% | 689 | 171 | 395 | 13 |
| GCA_001295065.1_ASM129506v1_genomic | 48% | 92.5% | 91.4% | 20.0X | 18.2X | 0.4 | 0.09% | 676 | 190 | 415 | 15 |
| GCA_001295105.1_ASM129510v1_genomic | 48% | 92.5% | 91.4% | 20.0X | 18.2X | 0.4 | 0.08% | 678 | 206 | 281 | 14 |
| GCA_001295115.1_ASM129511v1_genomic | 48% | 93.7% | 92.7% | 20.0X | 18.5X | 0.4 | 0.07% | 414 | 243 | 279 | 13 |
| GCA_001295145.1_ASM129514v1_genomic | 48% | 92.5% | 91.5% | 20.0X | 18.3X | 0.4 | 0.07% | 449 | 183 | 233 | 12 |
| GCA_001295185.1_ASM129518v1_genomic | 48% | 92.4% | 91.2% | 20.0X | 18.2X | 0.4 | 0.09% | 676 | 234 | 322 | 10 |
| GCA_001487065.1_Yersinia_pestis_genomic | 48% | 92.6% | 91.7% | 20.0X | 18.3X | 0.4 | 0.01% | 209 | 14 | 16 | 37 |
| GCA_001509855.1_ASM150985v1_genomic | 48% | 96.3% | 95.5% | 20.0X | 19.1X | 0.4 | 0.01% | 66 | 9 | 21 | 5 |
| GCA_001509865.1_ASM150986v1_genomic | 48% | 96.4% | 95.7% | 20.0X | 19.1X | 0.4 | 0.01% | 67 | 21 | 18 | 0 |
| GCA_001559935.1_ASM155993v1_genomic | 48% | 93.3% | 91.7% | 20.0X | 18.3X | 0.4 | 0.16% | 247 | 388 | 4677 | 85 |
| GCA_001595585.1_ASM159558v1_genomic | 48% | 93.6% | 92.5% | 20.0X | 18.5X | 0.4 | 0.06% | 234 | 169 | 457 | 4 |
| GCA_001601285.1_ASM160128v1_genomic | 48% | 94.0% | 92.9% | 20.0X | 18.6X | 0.4 | 0.06% | 193 | 72 | 900 | 5 |
| GCA_001601675.1_ASM160167v1_genomic | 48% | 91.2% | 89.6% | 20.0X | 17.9X | 0.3 | 0.32% | 598 | 120 | 10044 | 149 |
| GCA_001601735.1_ASM160173v1_genomic | 48% | 93.2% | 91.7% | 20.0X | 18.3X | 0.4 | 0.28% | ||||
| GCA_001613865.1_ASM161386v1_genomic | 48% | 91.6% | 90.0% | 20.0X | 18.0X | 0.3 | 0.34% | 227 | 238 | 11921 | 283 |
| GCA_001613885.1_ASM161388v1_genomic | 48% | 93.7% | 92.3% | 20.0X | 18.4X | 0.4 | 0.05% | 225 | 133 | 497 | 9 |
| GCA_001613895.1_ASM161389v1_genomic | 48% | 93.9% | 92.8% | 20.0X | 18.5X | 0.4 | 0.05% | 236 | 87 | 214 | 7 |
| GCA_001617705.1_Yersinia_pestis_C-791_genomic | 48% | 93.8% | 92.6% | 20.0X | 18.5X | 0.4 | 0.06% | 229 | 162 | 518 | 7 |
| GCA_001617715.1_Yersinia_pestis_M-519_genomic | 48% | 93.8% | 92.7% | 20.0X | 18.5X | 0.4 | 0.05% | 282 | 97 | 197 | 3 |
| GCA_001617725.1_Yersinia_pestis_M-1484_genomic | 48% | 92.6% | 91.0% | 20.0X | 18.2X | 0.4 | 0.09% | 272 | 230 | 1710 | 23 |
| GCA_001617735.1_Yersinia_pestis_M-1763_genomic | 48% | 93.5% | 92.3% | 20.0X | 18.4X | 0.4 | 0.05% | 255 | 107 | 270 | 3 |
| GCA_001617785.1_Yersinia_pestis_M-549_genomic | 48% | 92.3% | 91.1% | 20.0X | 18.2X | 0.4 | 0.05% | 228 | 111 | 120 | 3 |
| GCA_001617805.1_Yersinia_pestis_173_genomic | 48% | 93.7% | 92.5% | 20.0X | 18.5X | 0.4 | 0.04% | 231 | 105 | 146 | 5 |
| GCA_001617815.1_Yersinia_pestis_M-1453_genomic | 48% | 91.7% | 90.4% | 20.0X | 18.1X | 0.3 | 0.05% | 246 | 107 | 363 | 9 |
| GCA_001693595.1_ASM169359v1_genomic | 48% | 94.4% | 93.7% | 20.0X | 18.9X | 0.4 | 0.01% | 28 | 12 | 96 | 0 |
| GCA_001972385.1_ASM197238v1_genomic | 48% | 92.4% | 91.5% | 20.0X | 18.3X | 0.4 | 0.09% | 988 | 143 | 157 | 36 |
| GCA_001972395.1_ASM197239v1_genomic | 48% | 92.4% | 91.5% | 20.0X | 18.3X | 0.4 | 0.09% | 890 | 141 | 156 | 31 |
| GCA_001972405.1_ASM197240v1_genomic | 48% | 91.4% | 90.5% | 20.0X | 18.1X | 0.3 | 0.09% | 837 | 141 | 148 | 30 |
| GCA_001972415.1_ASM197241v1_genomic | 48% | 93.3% | 92.3% | 20.0X | 18.4X | 0.4 | 0.09% | 935 | 138 | 149 | 32 |
| GCA_001972465.1_ASM197246v1_genomic | 48% | 92.4% | 91.5% | 20.0X | 18.3X | 0.4 | 0.09% | 863 | 139 | 153 | 35 |
| GCA_001972475.1_ASM197247v1_genomic | 48% | 94.5% | 93.6% | 20.0X | 18.7X | 0.4 | 0.07% | 639 | 121 | 100 | 24 |
| GCA_001972505.1_ASM197250v1_genomic | 48% | 94.4% | 93.4% | 20.0X | 18.7X | 0.4 | 0.07% | 768 | 124 | 114 | 48 |
| GCA_001972515.1_ASM197251v1_genomic | 48% | 94.5% | 93.6% | 20.0X | 18.7X | 0.4 | 0.07% | 564 | 121 | 98 | 25 |
| GCA_002005285.1_ASM200528v1_genomic | 48% | 96.1% | 95.3% | 20.0X | 19.1X | 0.4 | 0.12% | 220 | 82 | 2175 | 145 |
| GCA_002127355.1_ASM212735v1_genomic | 48% | 92.5% | 91.5% | 20.0X | 18.3X | 0.4 | 0.08% | 674 | 141 | 155 | 13 |
| GCA_002127365.1_ASM212736v1_genomic | 48% | 92.5% | 91.5% | 20.0X | 18.3X | 0.4 | 0.08% | 746 | 141 | 152 | 21 |
| GCA_002127375.1_ASM212737v1_genomic | 48% | 92.3% | 91.4% | 20.0X | 18.2X | 0.4 | 0.08% | 632 | 141 | 155 | 8 |
| GCA_002165475.1_ASM216547v1_genomic | 48% | 92.5% | 91.5% | 20.0X | 18.3X | 0.4 | 0.09% | 787 | 137 | 155 | 19 |
| GCA_002173795.1_ASM217379v1_genomic | 48% | 94.5% | 93.5% | 20.0X | 18.7X | 0.4 | 0.06% | 517 | 122 | 96 | 19 |
| GCA_002173805.1_ASM217380v1_genomic | 48% | 94.5% | 93.5% | 20.0X | 18.7X | 0.4 | 0.07% | 688 | 123 | 95 | 30 |
| GCA_002173815.1_ASM217381v1_genomic | 48% | 94.3% | 93.4% | 20.0X | 18.6X | 0.4 | 0.07% | 575 | 120 | 99 | 29 |
| GCA_002188685.1_ASM218868v1_genomic | 48% | 94.5% | 93.6% | 20.0X | 18.7X | 0.4 | 0.07% | 558 | 119 | 93 | 19 |
| GCA_002188725.1_ASM218872v1_genomic | 48% | 94.5% | 93.6% | 20.0X | 18.7X | 0.4 | 0.07% | 600 | 114 | 94 | 24 |
| GCA_002188755.1_ASM218875v1_genomic | 48% | 94.3% | 93.3% | 20.0X | 18.6X | 0.4 | 0.07% | 579 | 121 | 95 | 30 |
| GCA_002188765.1_ASM218876v1_genomic | 48% | 93.8% | 92.8% | 20.0X | 18.5X | 0.4 | 0.07% | 664 | 112 | 94 | 30 |
| GCA_002188775.1_ASM218877v1_genomic | 48% | 94.5% | 93.6% | 20.0X | 18.7X | 0.4 | 0.07% | 599 | 118 | 97 | 27 |
| GCA_002188815.1_ASM218881v1_genomic | 48% | 94.4% | 93.4% | 20.0X | 18.6X | 0.4 | 0.07% | 637 | 119 | 104 | 36 |
| GCA_002188835.1_ASM218883v1_genomic | 48% | 95.0% | 94.2% | 20.0X | 18.8X | 0.4 | 0.04% | 378 | 88 | 53 | 19 |
| GCA_002188845.1_ASM218884v1_genomic | 48% | 94.4% | 93.5% | 20.0X | 18.7X | 0.4 | 0.07% | 705 | 119 | 107 | 42 |
| GCA_002188855.1_ASM218885v1_genomic | 48% | 93.5% | 92.7% | 20.0X | 18.5X | 0.4 | 0.04% | 374 | 62 | 47 | 29 |
| GCA_002412225.1_Y.pestis_A-1486_genomic | 48% | 93.0% | 91.2% | 20.0X | 18.2X | 0.4 | 0.07% | 161 | 349 | 1289 | 11 |
| GCA_002412235.1_Y.pestis_A-1249_genomic | 48% | 93.2% | 91.9% | 20.0X | 18.3X | 0.4 | 0.09% | 477 | 223 | 1206 | 20 |
| GCA_002412245.1_Y.pestis_A-1691_genomic | 48% | 94.1% | 92.6% | 20.0X | 18.5X | 0.4 | 0.07% | 182 | 528 | 1204 | 20 |
| GCA_002412255.1_Y.pestis_A-1836_genomic | 48% | 94.1% | 93.0% | 20.0X | 18.6X | 0.4 | 0.30% | 165 | 230 | 11343 | 226 |
| GCA_002412305.1_Y.pestis_A-1809_genomic | 48% | 93.4% | 91.9% | 20.0X | 18.4X | 0.4 | 0.25% | 227 | 117 | 8645 | 110 |
| GCA_002529545.1_ASM252954v1_genomic | 48% | 92.4% | 91.5% | 20.0X | 18.3X | 0.4 | 0.04% | 266 | 78 | 59 | 6 |
| GCA_002981895.1_ASM298189v1_genomic | 48% | 93.2% | 92.3% | 20.0X | 18.4X | 0.4 | 0.06% | 434 | 126 | 101 | 14 |
| GCA_002981915.1_ASM298191v1_genomic | 48% | 95.1% | 94.2% | 20.0X | 18.8X | 0.4 | 0.06% | 447 | 126 | 101 | 9 |
| GCA_002981925.1_ASM298192v1_genomic | 48% | 93.8% | 93.0% | 20.0X | 18.6X | 0.4 | 0.06% | ||||
| GCA_002981955.1_ASM298195v1_genomic | 48% | 93.8% | 92.9% | 20.0X | 18.5X | 0.4 | 0.06% | 476 | 126 | 102 | 12 |
| GCA_002981975.1_ASM298197v1_genomic | 48% | 95.2% | 94.3% | 20.0X | 18.8X | 0.4 | 0.06% | 456 | 122 | 104 | 9 |
| GCA_002981995.1_ASM298199v1_genomic | 48% | 95.1% | 94.2% | 20.0X | 18.8X | 0.4 | 0.06% | 474 | 121 | 97 | 11 |
| GCA_002993145.1_ASM299314v1_genomic | 48% | 92.6% | 91.6% | 20.0X | 18.3X | 0.4 | 0.08% | 679 | 132 | 240 | 9 |
| GCA_003074155.1_ASM307415v1_genomic | 48% | 94.3% | 93.2% | 20.0X | 18.6X | 0.4 | 0.04% | 161 | 111 | 243 | 12 |
| GCA_003074175.1_ASM307417v1_genomic | 48% | 93.5% | 92.0% | 20.0X | 18.4X | 0.4 | 0.07% | 435 | 204 | 549 | 12 |
| GCA_003074195.1_ASM307419v1_genomic | 48% | 94.2% | 93.0% | 20.0X | 18.6X | 0.4 | 0.04% | 157 | 128 | 225 | 13 |
| GCA_003074215.1_ASM307421v1_genomic | 48% | 94.4% | 93.4% | 20.0X | 18.7X | 0.4 | 0.04% | 171 | 80 | 227 | 9 |
| GCA_003074235.1_ASM307423v1_genomic | 48% | 91.8% | 90.5% | 20.0X | 18.1X | 0.3 | 0.09% | 157 | 156 | 2264 | 35 |
| GCA_003074255.1_ASM307425v1_genomic | 48% | 94.0% | 92.9% | 20.0X | 18.5X | 0.4 | 0.05% | 170 | 294 | 747 | 8 |
| GCA_003074275.1_ASM307427v1_genomic | 48% | 90.7% | 88.3% | 20.0X | 17.6X | 0.3 | 0.11% | 214 | 187 | 2931 | 50 |
| GCA_003074295.1_ASM307429v1_genomic | 48% | 93.7% | 92.3% | 20.0X | 18.4X | 0.4 | 0.05% | 227 | 214 | 366 | 6 |
| GCA_003074315.1_ASM307431v1_genomic | 48% | 94.2% | 92.8% | 20.0X | 18.5X | 0.4 | 0.04% | 153 | 111 | 408 | 10 |
| GCA_003074335.1_ASM307433v1_genomic | 48% | 93.9% | 92.9% | 20.0X | 18.5X | 0.4 | 0.05% | 233 | 88 | 184 | 3 |
| GCA_003074355.1_ASM307435v1_genomic | 48% | 93.8% | 92.6% | 20.0X | 18.5X | 0.4 | 0.05% | 240 | 99 | 203 | 4 |
| GCA_003074375.1_ASM307437v1_genomic | 48% | 93.9% | 92.9% | 20.0X | 18.6X | 0.4 | 0.05% | 240 | 94 | 158 | 4 |
| GCA_003074395.1_ASM307439v1_genomic | 48% | 92.5% | 91.4% | 20.0X | 18.2X | 0.4 | 0.08% | 671 | 150 | 200 | 8 |
| GCA_003074415.1_ASM307441v1_genomic | 48% | 92.6% | 91.6% | 20.0X | 18.3X | 0.4 | 0.08% | 685 | 133 | 230 | 9 |
| GCA_003074435.1_ASM307443v1_genomic | 48% | 92.5% | 91.4% | 20.0X | 18.3X | 0.4 | 0.09% | 676 | 156 | 368 | 12 |
| GCA_003074535.1_ASM307453v1_genomic | 48% | 92.5% | 91.5% | 20.0X | 18.3X | 0.4 | 0.04% | 179 | 74 | 161 | 5 |
| GCA_003074595.1_ASM307459v1_genomic | 48% | 92.5% | 91.5% | 20.0X | 18.3X | 0.4 | 0.04% | 174 | 69 | 124 | 6 |
| GCA_003085855.1_ASM308585v1_genomic | 48% | 93.6% | 92.5% | 20.0X | 18.5X | 0.4 | 0.05% | 246 | 147 | 244 | 9 |
| GCA_003085875.1_ASM308587v1_genomic | 48% | 92.2% | 91.0% | 20.0X | 18.2X | 0.4 | 0.08% | 672 | 138 | 403 | 9 |
| GCA_003085895.1_ASM308589v1_genomic | 48% | 93.2% | 91.9% | 20.0X | 18.3X | 0.4 | 0.07% | 414 | 172 | 506 | 12 |
| GCA_003085915.1_ASM308591v1_genomic | 48% | 94.4% | 93.5% | 20.0X | 18.7X | 0.4 | 0.06% | 162 | 329 | 1174 | 13 |
| GCA_003085935.1_ASM308593v1_genomic | 48% | 92.5% | 91.4% | 20.0X | 18.2X | 0.4 | 0.09% | ||||
| GCA_003085955.1_ASM308595v1_genomic | 48% | 93.7% | 92.6% | 20.0X | 18.5X | 0.4 | 0.09% | 406 | 338 | 1033 | 14 |
| GCA_003085975.1_ASM308597v1_genomic | 48% | 92.4% | 91.0% | 20.0X | 18.2X | 0.4 | 0.06% | 231 | 278 | 485 | 8 |
| GCA_003085995.1_ASM308599v1_genomic | 48% | 93.7% | 92.5% | 20.0X | 18.5X | 0.4 | 0.05% | 234 | 200 | 270 | 10 |
| GCA_003086015.1_ASM308601v1_genomic | 48% | 91.8% | 90.4% | 20.0X | 18.0X | 0.3 | 0.04% | 159 | 117 | 313 | 10 |
| GCA_003086035.1_ASM308603v1_genomic | 48% | 93.4% | 92.2% | 20.0X | 18.4X | 0.4 | 0.08% | 409 | 174 | 1105 | 9 |
| GCA_003086055.1_ASM308605v1_genomic | 48% | 93.9% | 92.8% | 20.0X | 18.5X | 0.4 | 0.05% | 237 | 87 | 241 | 3 |
| GCA_003086075.1_ASM308607v1_genomic | 48% | 92.6% | 90.0% | 20.0X | 18.0X | 0.3 | 0.33% | 242 | 213 | 10642 | 241 |
| GCA_003086095.1_ASM308609v1_genomic | 48% | 93.9% | 92.6% | 20.0X | 18.5X | 0.4 | 0.06% | 228 | 249 | 523 | 13 |
| GCA_003086115.1_ASM308611v1_genomic | 48% | 93.2% | 91.7% | 20.0X | 18.4X | 0.4 | 0.36% | 240 | 321 | 11995 | 323 |
| GCA_003086155.1_ASM308615v1_genomic | 48% | 92.4% | 91.0% | 20.0X | 18.2X | 0.4 | 0.06% | 228 | 257 | 492 | 8 |
| GCA_003122795.1_Y.pestis_I-2422_genomic | 48% | 93.6% | 92.1% | 20.0X | 18.4X | 0.4 | 0.08% | 404 | 155 | 1104 | 11 |
| GCA_003797205.1_ASM379720v1_genomic | 48% | 96.3% | 95.6% | 20.0X | 19.2X | 0.4 | 0.02% | 62 | 19 | 28 | 1 |
| GCA_003798085.1_ASM379808v1_genomic | 48% | 94.5% | 93.8% | 20.0X | 18.9X | 0.4 | 0.02% | 56 | 18 | 20 | 0 |
| GCA_003798225.1_ASM379822v1_genomic | 48% | 95.5% | 94.5% | 20.0X | 19.0X | 0.4 | 0.04% | 224 | 65 | 85 | 2 |
| GCA_004023585.1_ASM402358v1_genomic | 48% | 91.6% | 90.2% | 20.0X | 18.0X | 0.3 | 0.04% | 219 | 80 | 62 | 2 |
| GCA_004023595.1_ASM402359v1_genomic | 48% | 93.3% | 91.7% | 20.0X | 18.3X | 0.4 | 0.04% | 223 | 76 | 62 | 2 |
| GCA_006376415.1_ASM637641v1_genomic | 48% | 90.0% | 89.0% | 20.0X | 17.8X | 0.3 | 0.06% | 232 | 127 | 492 | 16 |
| GCA_006376435.1_ASM637643v1_genomic | 48% | 93.7% | 92.7% | 20.0X | 18.5X | 0.4 | 0.05% | 235 | 71 | 440 | 13 |
| GCA_006376475.1_ASM637647v1_genomic | 48% | 88.0% | 87.0% | 20.0X | 17.4X | 0.3 | 0.08% | 216 | 171 | 1260 | 14 |
| GCA_006376495.1_ASM637649v1_genomic | 48% | 90.0% | 88.9% | 20.0X | 17.8X | 0.3 | 0.05% | 230 | 180 | 215 | 8 |
| GCA_006376505.1_ASM637650v1_genomic | 48% | 92.3% | 91.2% | 20.0X | 18.2X | 0.4 | 0.09% | 671 | 188 | 593 | 22 |
| GCA_006376535.1_ASM637653v1_genomic | 48% | 89.8% | 87.9% | 20.0X | 17.5X | 0.3 | 0.08% | 244 | 431 | 847 | 58 |
| GCA_006376545.1_ASM637654v1_genomic | 48% | 92.3% | 91.0% | 20.0X | 18.2X | 0.4 | 0.09% | 670 | 203 | 573 | 16 |
| GCA_006376575.1_ASM637657v1_genomic | 48% | 90.5% | 89.4% | 20.0X | 17.8X | 0.3 | 0.05% | 222 | 160 | 211 | 7 |
| GCA_006376585.1_ASM637658v1_genomic | 48% | 91.8% | 90.7% | 20.0X | 18.1X | 0.3 | 0.08% | 607 | 135 | 246 | 10 |
| GCA_006517425.1_ASM651742v1_genomic | 48% | 94.4% | 93.5% | 20.0X | 18.7X | 0.4 | 0.06% | 422 | 121 | 200 | 9 |
| GCA_006546665.1_ASM654666v1_genomic | 48% | 94.4% | 93.4% | 20.0X | 18.6X | 0.4 | 0.06% | 419 | 116 | 202 | 11 |
| GCA_006546725.1_ASM654672v1_genomic | 48% | 94.5% | 93.5% | 20.0X | 18.7X | 0.4 | 0.06% | 422 | 138 | 249 | 12 |
| GCA_006546745.1_ASM654674v1_genomic | 48% | 94.3% | 93.2% | 20.0X | 18.6X | 0.4 | 0.06% | 411 | 120 | 189 | 14 |
| GCA_008630375.1_ASM863037v1_genomic | 48% | 92.2% | 90.8% | 20.0X | 18.1X | 0.4 | 0.12% | ||||
| GCA_008630395.1_ASM863039v1_genomic | 48% | 93.3% | 92.0% | 20.0X | 18.4X | 0.4 | 0.05% | 236 | 190 | 275 | 7 |
| GCA_008630415.1_ASM863041v1_genomic | 48% | 91.6% | 90.4% | 20.0X | 18.0X | 0.3 | 0.09% | 608 | 148 | 550 | 15 |
| GCA_008630435.1_ASM863043v1_genomic | 48% | 91.3% | 90.2% | 20.0X | 18.0X | 0.3 | 0.05% | 300 | 109 | 368 | 13 |
| GCA_008630455.1_ASM863045v1_genomic | 48% | 91.6% | 90.5% | 20.0X | 18.1X | 0.3 | 0.08% | 612 | 133 | 219 | 9 |
| GCA_008630485.1_ASM863048v1_genomic | 48% | 90.8% | 89.7% | 20.0X | 17.9X | 0.3 | 0.05% | 232 | 108 | 395 | 11 |
| GCA_008630575.1_ASM863057v1_genomic | 48% | 93.9% | 92.8% | 20.0X | 18.5X | 0.4 | 0.05% | 233 | 122 | 329 | 12 |
| GCA_009295925.1_ASM929592v1_genomic | 48% | 95.3% | 94.6% | 20.0X | 18.9X | 0.4 | 0.03% | 160 | 70 | 51 | 6 |
| GCA_009295945.1_ASM929594v1_genomic | 48% | 93.9% | 93.1% | 20.0X | 18.6X | 0.4 | 0.04% | 169 | 71 | 58 | 14 |
| GCA_009295965.1_ASM929596v1_genomic | 48% | 95.5% | 94.7% | 20.0X | 18.9X | 0.4 | 0.04% | 205 | 85 | 69 | 13 |
| GCA_009295985.1_ASM929598v1_genomic | 48% | 94.2% | 93.4% | 20.0X | 18.7X | 0.4 | 0.04% | 245 | 76 | 77 | 9 |
| GCA_009296005.1_ASM929600v1_genomic | 48% | 91.8% | 91.0% | 20.0X | 18.2X | 0.4 | 0.05% | 230 | 74 | 82 | 6 |
| GCA_009363195.1_ASM936319v1_genomic | 48% | 95.5% | 94.7% | 20.0X | 18.9X | 0.4 | 0.04% | 186 | 73 | 90 | 14 |
| GCA_009667885.1_ASM966788v1_genomic | 48% | 94.4% | 93.4% | 20.0X | 18.6X | 0.4 | 0.04% | 260 | 76 | 67 | 9 |
| GCA_009667895.1_ASM966789v1_genomic | 48% | 94.7% | 93.7% | 20.0X | 18.7X | 0.4 | 0.04% | 251 | 76 | 67 | 5 |
| GCA_009667925.1_ASM966792v1_genomic | 48% | 94.7% | 93.7% | 20.0X | 18.7X | 0.4 | 0.04% | 250 | 81 | 65 | 5 |
| GCA_009667935.1_ASM966793v1_genomic | 48% | 94.7% | 93.7% | 20.0X | 18.7X | 0.4 | 0.04% | 255 | 79 | 64 | 6 |
| GCA_009667945.1_ASM966794v1_genomic | 48% | 94.5% | 93.5% | 20.0X | 18.8X | 0.4 | 0.04% | 260 | 84 | 66 | 7 |
| GCA_009667985.1_ASM966798v1_genomic | 48% | 94.4% | 93.4% | 20.0X | 18.7X | 0.4 | 0.04% | 263 | 75 | 66 | 9 |
| GCA_009669545.1_ASM966954v1_genomic | 48% | 94.6% | 93.6% | 20.0X | 18.7X | 0.4 | 0.04% | 257 | 81 | 68 | 8 |
| GCA_009669555.1_ASM966955v1_genomic | 48% | 94.3% | 93.3% | 20.0X | 18.6X | 0.4 | 0.04% | 252 | 73 | 66 | 5 |
| GCA_009669565.1_ASM966956v1_genomic | 48% | 94.5% | 93.5% | 20.0X | 18.7X | 0.4 | 0.04% | 259 | 75 | 65 | 7 |
| GCA_009669605.1_ASM966960v1_genomic | 48% | 94.7% | 93.7% | 20.0X | 18.7X | 0.4 | 0.04% | 250 | 78 | 66 | 5 |
| GCA_009669625.1_ASM966962v1_genomic | 48% | 94.7% | 93.7% | 20.0X | 18.7X | 0.4 | 0.04% | 251 | 78 | 68 | 7 |
| GCA_009669635.1_ASM966963v1_genomic | 48% | 94.4% | 93.4% | 20.0X | 18.6X | 0.4 | 0.04% | 253 | 69 | 68 | 6 |
| GCA_009669665.1_ASM966966v1_genomic | 48% | 94.7% | 93.8% | 20.0X | 18.7X | 0.4 | 0.04% | 254 | 80 | 65 | 7 |
| GCA_009669675.1_ASM966967v1_genomic | 48% | 94.7% | 93.7% | 20.0X | 18.7X | 0.4 | 0.04% | 249 | 78 | 70 | 5 |
| GCA_009669705.1_ASM966970v1_genomic | 48% | 91.9% | 91.0% | 20.0X | 18.2X | 0.4 | 0.04% | 253 | 74 | 59 | 5 |
| GCA_009669715.1_ASM966971v1_genomic | 48% | 94.4% | 93.4% | 20.0X | 18.7X | 0.4 | 0.04% | 255 | 70 | 67 | 7 |
| GCA_009669725.1_ASM966972v1_genomic | 48% | 94.5% | 93.6% | 20.0X | 18.7X | 0.4 | 0.04% | 258 | 81 | 67 | 6 |
| GCA_009669765.1_ASM966976v1_genomic | 48% | 94.7% | 93.7% | 20.0X | 18.7X | 0.4 | 0.04% | 247 | 76 | 64 | 7 |
| GCA_009669775.1_ASM966977v1_genomic | 48% | 94.7% | 93.8% | 20.0X | 18.7X | 0.4 | 0.04% | 250 | 80 | 69 | 4 |
| GCA_009669805.1_ASM966980v1_genomic | 48% | 94.6% | 93.7% | 20.0X | 18.7X | 0.4 | 0.04% | 255 | 79 | 63 | 4 |
| GCA_009669825.1_ASM966982v1_genomic | 48% | 94.4% | 93.4% | 20.0X | 18.6X | 0.4 | 0.04% | 256 | 67 | 70 | 8 |
| GCA_009669835.1_ASM966983v1_genomic | 48% | 94.6% | 93.6% | 20.0X | 18.7X | 0.4 | 0.04% | 252 | 79 | 67 | 6 |
| GCA_009669845.1_ASM966984v1_genomic | 48% | 94.4% | 93.4% | 20.0X | 18.7X | 0.4 | 0.04% | 255 | 68 | 64 | 7 |
| GCA_009669875.1_ASM966987v1_genomic | 48% | 94.6% | 93.7% | 20.0X | 18.7X | 0.4 | 0.04% | 248 | 80 | 63 | 5 |
| GCA_009669905.1_ASM966990v1_genomic | 48% | 94.4% | 93.4% | 20.0X | 18.6X | 0.4 | 0.04% | 259 | 70 | 63 | 9 |
| GCA_009669925.1_ASM966992v1_genomic | 48% | 94.7% | 93.7% | 20.0X | 18.7X | 0.4 | 0.04% | 250 | 81 | 63 | 4 |
| GCA_009669935.1_ASM966993v1_genomic | 48% | 94.4% | 93.4% | 20.0X | 18.7X | 0.4 | 0.04% | 254 | 72 | 65 | 5 |
| GCA_009669955.1_ASM966995v1_genomic | 48% | 94.4% | 93.5% | 20.0X | 18.7X | 0.4 | 0.04% | 246 | 74 | 67 | 4 |
| GCA_009669975.1_ASM966997v1_genomic | 48% | 94.7% | 93.7% | 20.0X | 18.7X | 0.4 | 0.04% | 243 | 78 | 66 | 4 |
| GCA_009670005.1_ASM967000v1_genomic | 48% | 94.7% | 93.7% | 20.0X | 18.7X | 0.4 | 0.04% | 251 | 79 | 65 | 4 |
| GCA_009670015.1_ASM967001v1_genomic | 48% | 94.5% | 93.6% | 20.0X | 18.7X | 0.4 | 0.04% | 250 | 75 | 68 | 5 |
| GCA_009670045.1_ASM967004v1_genomic | 48% | 94.7% | 93.7% | 20.0X | 18.7X | 0.4 | 0.04% | 250 | 80 | 67 | 5 |
| GCA_009670055.1_ASM967005v1_genomic | 48% | 94.6% | 93.7% | 20.0X | 18.7X | 0.4 | 0.04% | 256 | 77 | 70 | 5 |
| GCA_009670075.1_ASM967007v1_genomic | 48% | 94.5% | 93.5% | 20.0X | 18.7X | 0.4 | 0.04% | 252 | 74 | 70 | 11 |
| GCA_009670105.1_ASM967010v1_genomic | 48% | 94.4% | 93.5% | 20.0X | 18.7X | 0.4 | 0.04% | 251 | 76 | 65 | 6 |
| GCA_009670115.1_ASM967011v1_genomic | 48% | 93.9% | 92.9% | 20.0X | 18.6X | 0.4 | 0.04% | 261 | 71 | 71 | 8 |
| GCA_009670135.1_ASM967013v1_genomic | 48% | 92.6% | 91.6% | 20.0X | 18.3X | 0.4 | 0.04% | 240 | 66 | 66 | 5 |
| GCA_009670155.1_ASM967015v1_genomic | 48% | 92.1% | 91.1% | 20.0X | 18.2X | 0.4 | 0.04% | 244 | 73 | 65 | 9 |
| GCA_009670185.1_ASM967018v1_genomic | 48% | 94.7% | 93.7% | 20.0X | 18.7X | 0.4 | 0.04% | 251 | 79 | 64 | 6 |
| GCA_009670205.1_ASM967020v1_genomic | 48% | 94.5% | 93.6% | 20.0X | 18.7X | 0.4 | 0.04% | 257 | 78 | 65 | 6 |
| GCA_009670225.1_ASM967022v1_genomic | 48% | 94.5% | 93.5% | 20.0X | 18.7X | 0.4 | 0.04% | 257 | 76 | 63 | 6 |
| GCA_009670235.1_ASM967023v1_genomic | 48% | 94.3% | 93.3% | 20.0X | 18.6X | 0.4 | 0.04% | 256 | 75 | 68 | 6 |
| GCA_009670245.1_ASM967024v1_genomic | 48% | 93.9% | 92.9% | 20.0X | 18.6X | 0.4 | 0.04% | 254 | 71 | 68 | 10 |
| GCA_009670285.1_ASM967028v1_genomic | 48% | 94.5% | 93.5% | 20.0X | 18.7X | 0.4 | 0.04% | 261 | 73 | 64 | 12 |
| GCA_009670305.1_ASM967030v1_genomic | 48% | 94.4% | 93.4% | 20.0X | 18.7X | 0.4 | 0.04% | 256 | 76 | 66 | 8 |
| GCA_009670325.1_ASM967032v1_genomic | 48% | 94.7% | 93.7% | 20.0X | 18.7X | 0.4 | 0.04% | 246 | 84 | 67 | 4 |
| GCA_009670345.1_ASM967034v1_genomic | 48% | 94.4% | 93.5% | 20.0X | 18.7X | 0.4 | 0.04% | 258 | 80 | 66 | 10 |
| GCA_009670355.1_ASM967035v1_genomic | 48% | 92.3% | 91.3% | 20.0X | 18.2X | 0.4 | 0.04% | 246 | 80 | 58 | 6 |
| GCA_009670385.1_ASM967038v1_genomic | 48% | 94.4% | 93.4% | 20.0X | 18.7X | 0.4 | 0.04% | 251 | 73 | 66 | 7 |
| GCA_009670395.1_ASM967039v1_genomic | 48% | 94.4% | 93.5% | 20.0X | 18.7X | 0.4 | 0.04% | 257 | 72 | 64 | 6 |
| GCA_009670415.1_ASM967041v1_genomic | 48% | 94.5% | 93.5% | 20.0X | 18.7X | 0.4 | 0.04% | 261 | 72 | 62 | 9 |
| GCA_009670445.1_ASM967044v1_genomic | 48% | 94.6% | 93.7% | 20.0X | 18.7X | 0.4 | 0.04% | 257 | 78 | 67 | 5 |
| GCA_009670465.1_ASM967046v1_genomic | 48% | 93.9% | 93.0% | 20.0X | 18.6X | 0.4 | 0.04% | 262 | 76 | 64 | 6 |
| GCA_009670475.1_ASM967047v1_genomic | 48% | 94.6% | 93.7% | 20.0X | 18.7X | 0.4 | 0.04% | 252 | 78 | 64 | 6 |
| GCA_009670485.1_ASM967048v1_genomic | 48% | 94.6% | 93.7% | 20.0X | 18.7X | 0.4 | 0.04% | 260 | 80 | 66 | 6 |
| GCA_009670515.1_ASM967051v1_genomic | 48% | 94.6% | 93.7% | 20.0X | 18.7X | 0.4 | 0.04% | 260 | 81 | 67 | 7 |
| GCA_009670545.1_ASM967054v1_genomic | 48% | 94.5% | 93.6% | 20.0X | 18.7X | 0.4 | 0.04% | 256 | 79 | 65 | 8 |
| GCA_009670565.1_ASM967056v1_genomic | 48% | 94.7% | 93.7% | 20.0X | 18.7X | 0.4 | 0.04% | 255 | 78 | 70 | 7 |
| GCA_009670575.1_ASM967057v1_genomic | 48% | 94.7% | 93.7% | 20.0X | 18.7X | 0.4 | 0.04% | 254 | 78 | 64 | 8 |
| GCA_009670585.1_ASM967058v1_genomic | 48% | 94.5% | 93.5% | 20.0X | 18.7X | 0.4 | 0.04% | 253 | 78 | 65 | 7 |
| GCA_009670605.1_ASM967060v1_genomic | 48% | 94.7% | 93.7% | 20.0X | 18.7X | 0.4 | 0.04% | 254 | 81 | 64 | 4 |
| GCA_009670625.1_ASM967062v1_genomic | 48% | 94.5% | 93.5% | 20.0X | 18.7X | 0.4 | 0.04% | 249 | 77 | 65 | 5 |
| GCA_009670665.1_ASM967066v1_genomic | 48% | 93.2% | 92.2% | 20.0X | 18.4X | 0.4 | 0.04% | 246 | 71 | 63 | 5 |
| GCA_009670675.1_ASM967067v1_genomic | 48% | 94.7% | 93.8% | 20.0X | 18.7X | 0.4 | 0.04% | 255 | 79 | 63 | 8 |
| GCA_009670705.1_ASM967070v1_genomic | 48% | 94.7% | 93.8% | 20.0X | 18.7X | 0.4 | 0.04% | 250 | 78 | 65 | 4 |
| GCA_009670715.1_ASM967071v1_genomic | 48% | 91.9% | 91.0% | 20.0X | 18.2X | 0.4 | 0.04% | 239 | 76 | 58 | 5 |
| GCA_009670725.1_ASM967072v1_genomic | 48% | 94.7% | 93.8% | 20.0X | 18.7X | 0.4 | 0.04% | 249 | 78 | 65 | 6 |
| GCA_009670765.1_ASM967076v1_genomic | 48% | 94.6% | 93.7% | 20.0X | 18.7X | 0.4 | 0.04% | 249 | 79 | 64 | 5 |
| GCA_009670775.1_ASM967077v1_genomic | 48% | 94.7% | 93.8% | 20.0X | 18.7X | 0.4 | 0.04% | 246 | 75 | 64 | 6 |
| GCA_009670785.1_ASM967078v1_genomic | 48% | 94.4% | 93.4% | 20.0X | 18.7X | 0.4 | 0.04% | 250 | 68 | 65 | 6 |
| GCA_009670815.1_ASM967081v1_genomic | 48% | 94.7% | 93.8% | 20.0X | 18.7X | 0.4 | 0.04% | 248 | 80 | 67 | 4 |
| GCA_009670835.1_ASM967083v1_genomic | 48% | 94.6% | 93.7% | 20.0X | 18.7X | 0.4 | 0.04% | 244 | 76 | 63 | 6 |
| GCA_009670865.1_ASM967086v1_genomic | 48% | 94.4% | 93.5% | 20.0X | 18.7X | 0.4 | 0.04% | 255 | 69 | 64 | 5 |
| GCA_009670875.1_ASM967087v1_genomic | 48% | 94.1% | 93.2% | 20.0X | 18.6X | 0.4 | 0.04% | 247 | 79 | 67 | 4 |
| GCA_009670895.1_ASM967089v1_genomic | 48% | 94.7% | 93.8% | 20.0X | 18.7X | 0.4 | 0.04% | 253 | 79 | 66 | 5 |
| GCA_009670905.1_ASM967090v1_genomic | 48% | 94.7% | 93.7% | 20.0X | 18.7X | 0.4 | 0.04% | 243 | 80 | 68 | 4 |
| GCA_009670935.1_ASM967093v1_genomic | 48% | 94.4% | 93.4% | 20.0X | 18.7X | 0.4 | 0.04% | 248 | 70 | 64 | 4 |
| GCA_009670995.1_ASM967099v1_genomic | 48% | 94.7% | 93.8% | 20.0X | 18.7X | 0.4 | 0.04% | 252 | 80 | 67 | 5 |
| GCA_900095105.1_PRJEB15052_genomic | 49% | 88.5% | 85.5% | 20.0X | 17.0X | 0.3 | 0.09% | 163 | 152 | 68 | 3 |
| GCA_900460465.1_57940_B01_genomic | 48% | 94.3% | 93.5% | 20.0X | 18.8X | 0.4 | 0.01% | 46 | 15 | 29 | 0 |
| IP283 | 49% | 91.9% | 86.5% | 26.0X | 24.0X | 1.3 | 0.07% | 48 | 4 | 8 | 0 |
| IP542 | 48% | 86.9% | 84.6% | 31.0X | 28.0X | 1.5 | 0.08% | 231 | 20 | 36 | 2 |
| IP543 | 49% | 86.8% | 82.1% | 24.0X | 21.7X | 1.1 | 0.08% | 221 | 18 | 30 | 2 |
| IP557 | 49% | 90.0% | 85.6% | 25.0X | 23.1X | 1.2 | 0.07% | 238 | 20 | 25 | 2 |
| IP562 | 49% | 89.8% | 85.8% | 29.0X | 26.1X | 1.4 | 0.08% | 231 | 19 | 21 | 2 |
| IP579 | 48% | 91.1% | 86.8% | 23.0X | 22.0X | 1.2 | 0.07% | 48 | 2 | 9 | 0 |
| SAMEA104233046 | 46% | 82.9% | 6.6% | 5.0X | 5.1X | 0.5 | 1.65% | 21 | 0 | 3 | 0 |
| SAMEA104233047 | 47% | 74.6% | 11.2% | 4.0X | 5.1X | 0.5 | 0.66% | 62 | 4 | 2 | 0 |
| SAMEA104233048 | 45% | 77.3% | 21.5% | 5.0X | 6.4X | 0.7 | 0.60% | 158 | 5 | 6 | 1 |
| SAMEA104233049 | 46% | 92.8% | 67.6% | 12.0X | 11.8X | 1.2 | 0.30% | 452 | 21 | 16 | 4 |
| SAMEA104233050 | 48% | 88.3% | 71.0% | 15.0X | 15.5X | 1.5 | 0.44% | 361 | 7 | 6 | 2 |
| SAMEA104488961 | 49% | 94.4% | 91.9% | 39.0X | 38.6X | 3.1 | 0.22% | 231 | 19 | 13 | 2 |
| SAMEA1061800 | 46% | 93.2% | 33.6% | 8.0X | 8.2X | 0.7 | 1.08% | 32 | 2 | 3 | 1 |
| SAMEA3541826 | 47% | 86.8% | 27.5% | 7.0X | 7.3X | 0.7 | 0.99% | 195 | 3 | 7 | 0 |
| SAMEA3541827 | 47% | 93.4% | 85.1% | 19.0X | 19.5X | 2.2 | 1.27% | 334 | 7 | 9 | 1 |
| SAMEA3713711 | 44% | 88.7% | 53.3% | 10.0X | 12.0X | 0.9 | 0.17% | 115 | 8 | 8 | 2 |
| SAMEA3713712 | 46% | 90.5% | 73.2% | 13.0X | 15.0X | 0.9 | 0.24% | 166 | 9 | 9 | 4 |
| SAMEA3713713 | 45% | 90.7% | 81.9% | 18.0X | 19.8X | 1.4 | 0.16% | 198 | 11 | 12 | 4 |
| SAMEA3713714 | 49% | 87.7% | 62.7% | 12.0X | 13.1X | 1.0 | 0.14% | 138 | 2 | 6 | 3 |
| SAMEA3713715 | 48% | 90.5% | 86.6% | 24.0X | 24.2X | 1.6 | 0.18% | 206 | 8 | 10 | 3 |
| SAMEA3937653 | 47% | 89.6% | 48.4% | 9.0X | 10.5X | 0.9 | 0.11% | 61 | 5 | 2 | 1 |
| SAMEA3937654 | 48% | 91.5% | 81.8% | 18.0X | 18.3X | 1.6 | 0.17% | 88 | 4 | 4 | 1 |
| SAMEA4354665 | 49% | 92.4% | 85.3% | 18.0X | 18.0X | 1.3 | 0.13% | 211 | 12 | 22 | 3 |
| SAMEA5054089 | 47% | 95.2% | 94.4% | 39.0X | 37.9X | 2.8 | 0.88% | 96 | 6 | 6 | 2 |
| SAMEA5054090 | 44% | 94.9% | 89.0% | 41.0X | 46.6X | 2.9 | 0.89% | 103 | 9 | 5 | 2 |
| SAMEA5054092 | 44% | 93.6% | 84.1% | 28.0X | 30.7X | 1.4 | 0.70% | 107 | 13 | 10 | 3 |
| SAMEA5054093 | 45% | 75.1% | 21.8% | 5.0X | 6.3X | 0.4 | 1.36% | 29 | 0 | 3 | 0 |
| SAMEA5661360 | 50% | 83.8% | 40.2% | 8.0X | 8.8X | 0.8 | 0.20% | 80 | 2 | 2 | 0 |
| SAMEA5661363 | 48% | 94.6% | 92.4% | 31.0X | 30.4X | 2.1 | 0.13% | 223 | 15 | 27 | 2 |
| SAMEA5661364 | 47% | 73.8% | 10.5% | 4.0X | 5.1X | 0.5 | 0.14% | 31 | 0 | 1 | 1 |
| SAMEA5661365 | 47% | 85.3% | 23.3% | 6.0X | 6.9X | 0.6 | 0.12% | 36 | 2 | 2 | 1 |
| SAMEA5661367 | 48% | 90.7% | 78.7% | 19.0X | 21.1X | 1.7 | 0.09% | ||||
| SAMEA5661372 | 50% | 84.7% | 51.9% | 10.0X | 10.0X | 0.9 | 0.11% | 131 | 5 | 11 | 1 |
| SAMEA5661375 | 50% | 79.6% | 22.0% | 6.0X | 6.5X | 0.5 | 0.22% | 138 | 2 | 2 | 16 |
| SAMEA5661384 | 50% | 83.4% | 41.2% | 8.0X | 8.9X | 0.9 | 0.13% | 88 | 3 | 5 | 0 |
| SAMEA5661385 | 47% | 81.7% | 13.3% | 5.0X | 5.8X | 0.5 | 0.21% | 33 | 1 | 5 | 4 |
| SAMEA5661389 | 49% | 85.2% | 27.9% | 7.0X | 7.2X | 0.7 | 0.13% | 56 | 5 | 6 | 1 |
| SAMEA5661390 | 46% | 72.2% | 8.8% | 4.0X | 4.8X | 0.5 | 0.17% | 34 | 3 | 1 | 0 |
| SAMEA5818798 | 49% | 89.5% | 63.6% | 12.0X | 12.7X | 1.0 | 0.13% | 120 | 7 | 4 | 1 |
| SAMEA5818799 | 49% | 92.5% | 88.0% | 35.0X | 37.4X | 2.8 | 0.15% | 191 | 10 | 12 | 6 |
| SAMEA5818800 | 49% | 93.9% | 93.0% | 86.0X | 80.7X | 3.8 | 0.15% | 213 | 15 | 20 | 5 |
| SAMEA5818801 | 50% | 91.3% | 80.6% | 18.0X | 18.6X | 1.4 | 0.16% | 170 | 5 | 8 | 5 |
| SAMEA5818803 | 48% | 93.2% | 85.4% | 22.0X | 22.4X | 2.2 | 0.11% | 151 | 5 | 8 | 3 |
| SAMEA5818804 | 48% | 88.0% | 40.8% | 8.0X | 8.8X | 0.8 | 0.20% | 83 | 4 | 3 | 5 |
| SAMEA5818805 | 47% | 92.1% | 69.0% | 13.0X | 13.5X | 1.4 | 0.13% | 105 | 4 | 5 | 1 |
| SAMEA5818806 | 48% | 93.3% | 86.9% | 27.0X | 27.6X | 2.5 | 0.14% | 99 | 3 | 5 | 3 |
| SAMEA5818808 | 50% | 79.8% | 26.9% | 6.0X | 7.0X | 0.6 | 0.20% | 33 | 1 | 0 | 0 |
| SAMEA5818809 | 51% | 90.9% | 82.0% | 25.0X | 25.6X | 2.0 | 0.23% | 106 | 2 | 4 | 2 |
| SAMEA5818811 | 50% | 81.8% | 32.0% | 7.0X | 7.6X | 0.7 | 0.19% | 34 | 3 | 3 | 1 |
| SAMEA5818813 | 47% | 72.5% | 10.9% | 4.0X | 5.0X | 0.5 | 0.23% | 40 | 0 | 1 | 3 |
| SAMEA5818815 | 48% | 93.6% | 72.8% | 13.0X | 12.4X | 0.9 | 0.15% | 118 | 6 | 5 | 2 |
| SAMEA5818817 | 45% | 90.0% | 54.9% | 10.0X | 11.3X | 1.1 | 0.13% | 74 | 1 | 6 | 1 |
| SAMEA5818818 | 49% | 88.7% | 61.8% | 12.0X | 12.5X | 1.0 | 0.22% | 89 | 1 | 3 | 2 |
| SAMEA5818821 | 50% | 90.0% | 75.4% | 17.0X | 18.2X | 1.3 | 0.23% | 127 | 4 | 3 | 2 |
| SAMEA5818822 | 50% | 85.1% | 55.8% | 11.0X | 12.0X | 0.9 | 0.25% | 83 | 2 | 2 | 2 |
| SAMEA5818825 | 49% | 84.0% | 42.3% | 8.0X | 9.3X | 0.7 | 0.21% | 63 | 1 | 0 | 1 |
| SAMEA5818826 | 49% | 93.6% | 91.5% | 59.0X | 55.9X | 4.0 | 0.22% | ||||
| SAMEA5818828 | 50% | 90.2% | 76.9% | 18.0X | 19.2X | 1.4 | 0.24% | 129 | 5 | 2 | 2 |
| SAMEA5818829 | 49% | 92.0% | 85.2% | 28.0X | 28.7X | 2.1 | 0.24% | 147 | 3 | 6 | 2 |
| SAMEA5818830 | 49% | 91.1% | 80.1% | 21.0X | 21.9X | 1.7 | 0.23% | 136 | 6 | 4 | 2 |
| SAMN00715800 | 49% | 90.0% | 66.7% | 13.0X | 15.0X | 1.3 | 0.23% | 83 | 2 | 3 | 1 |
QualiMap
QualiMap is a platform-independent application to facilitate the quality control of alignment sequencing data and its derivatives like feature counts.
Coverage histogram
Distribution of the number of locations in the reference genome with a given depth of coverage.
For a set of DNA or RNA reads mapped to a reference sequence, such as a genome or transcriptome, the depth of coverage at a given base position is the number of high-quality reads that map to the reference at that position (Sims et al. 2014).
Bases of a reference sequence (y-axis) are groupped by their depth of coverage (0×, 1×, …, N×) (x-axis). This plot shows the frequency of coverage depths relative to the reference sequence for each read dataset, which provides an indirect measure of the level and variation of coverage depth in the corresponding sequenced sample.
If reads are randomly distributed across the reference sequence, this plot should resemble a Poisson distribution (Lander & Waterman 1988), with a peak indicating approximate depth of coverage, and more uniform coverage depth being reflected in a narrower spread. The optimal level of coverage depth depends on the aims of the experiment, though it should at minimum be sufficiently high to adequately address the biological question; greater uniformity of coverage is generally desirable, because it increases breadth of coverage for a given depth of coverage, allowing equivalent results to be achieved at a lower sequencing depth (Sampson et al. 2011; Sims et al. 2014). However, it is difficult to achieve uniform coverage depth in practice, due to biases introduced during sample preparation (van Dijk et al. 2014), sequencing (Ross et al. 2013) and read mapping (Sims et al. 2014).
This plot may include a small peak for regions of the reference sequence with zero depth of coverage. Such regions may be absent from the given sample (due to a deletion or structural rearrangement), present in the sample but not successfully sequenced (due to bias in sequencing or preparation), or sequenced but not successfully mapped to the reference (due to the choice of mapping algorithm, the presence of repeat sequences, or mismatches caused by variants or sequencing errors). Related factors cause most datasets to contain some unmapped reads (Sims et al. 2014).
Cumulative genome coverage
Percentage of the reference genome with at least the given depth of coverage.
For a set of DNA or RNA reads mapped to a reference sequence, such as a genome or transcriptome, the depth of coverage at a given base position is the number of high-quality reads that map to the reference at that position, while the breadth of coverage is the fraction of the reference sequence to which reads have been mapped with at least a given depth of coverage (Sims et al. 2014).
Defining coverage breadth in terms of coverage depth is useful, because sequencing experiments typically require a specific minimum depth of coverage over the region of interest (Sims et al. 2014), so the extent of the reference sequence that is amenable to analysis is constrained to lie within regions that have sufficient depth. With inadequate sequencing breadth, it can be difficult to distinguish the absence of a biological feature (such as a gene) from a lack of data (Green 2007).
For increasing coverage depths (1×, 2×, …, N×), coverage breadth is calculated as the percentage of the reference sequence that is covered by at least that number of reads, then plots coverage breadth (y-axis) against coverage depth (x-axis). This plot shows the relationship between sequencing depth and breadth for each read dataset, which can be used to gauge, for example, the likely effect of a minimum depth filter on the fraction of a genome available for analysis.
GC content distribution
Each solid line represents the distribution of GC content of mapped reads for a given sample.
GC bias is the difference between the guanine-cytosine content (GC-content) of a set of sequencing reads and the GC-content of the DNA or RNA in the original sample. It is a well-known issue with sequencing systems, and may be introduced by PCR amplification, among other factors (Benjamini & Speed 2012; Ross et al. 2013).
QualiMap calculates the GC-content of individual mapped reads, then groups those reads by their GC-content (1%, 2%, …, 100%), and plots the frequency of mapped reads (y-axis) at each level of GC-content (x-axis). This plot shows the GC-content distribution of mapped reads for each read dataset, which should ideally resemble that of the original sample. It can be useful to display the GC-content distribution of an appropriate reference sequence for comparison, and QualiMap has an option to do this (see the Qualimap 2 documentation).
Snippy
Snippy Rapid haploid variant calling and core genome alignment.
Snippy Variants
Variant type descriptive statistics.
The stacked bar graph shows the different variant types reported by snippy.