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        If you use plots from MultiQC in a publication or presentation, please cite:

        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

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        About MultiQC

        This report was generated using MultiQC, version 1.10.dev0

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        MultiQC is published in Bioinformatics:

        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

        A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.

        This report has been generated by the Plague Phylogeography analysis pipeline. For information about how to interpret these results, please see the documentation.

        Report generated on 2020-11-09, 09:43 based on data in:

        General Statistics

        Showing 539/539 rows and 11/17 columns.
        Sample Name% GC≥ 3X≥ 10XMedian covMean covM AlignedError rateVariant SNPVariant INSVariant DELVariant COMPLEX
        GCA_000006645.1_ASM664v1_genomic
        48%
        93.7%
        92.9%
        20.0X
        18.6X
        0.4
        0.04%
        249
        94
        70
        9
        GCA_000007885.1_ASM788v1_genomic
        48%
        94.7%
        93.8%
        20.0X
        18.7X
        0.4
        0.07%
        486
        132
        118
        9
        GCA_000013805.1_ASM1380v1_genomic
        48%
        92.0%
        91.2%
        20.0X
        18.2X
        0.4
        0.04%
        205
        80
        58
        4
        GCA_000013825.1_ASM1382v1_genomic
        48%
        95.4%
        94.5%
        20.0X
        18.9X
        0.4
        0.04%
        227
        71
        92
        3
        GCA_000016445.1_ASM1644v1_genomic
        48%
        93.3%
        92.4%
        20.0X
        18.5X
        0.4
        0.08%
        692
        135
        157
        11
        GCA_000022805.1_ASM2280v1_genomic
        48%
        96.1%
        95.3%
        20.0X
        19.0X
        0.4
        0.03%
        160
        153
        102
        9
        GCA_000022825.1_ASM2282v1_genomic
        48%
        96.1%
        95.3%
        20.0X
        19.0X
        0.4
        0.03%
        181
        200
        161
        18
        GCA_000022845.1_ASM2284v1_genomic
        48%
        93.1%
        92.4%
        20.0X
        18.5X
        0.4
        0.02%
        84
        58
        26
        0
        GCA_000168235.2_ASM16823v2_genomic
        48%
        95.9%
        95.0%
        20.0X
        19.1X
        0.4
        0.01%
        67
        25
        30
        1
        GCA_000169615.1_ASM16961v1_genomic
        48%
        92.8%
        91.8%
        20.0X
        18.4X
        0.4
        0.04%
        238
        65
        93
        2
        GCA_000169635.1_ASM16963v1_genomic
        48%
        96.0%
        95.3%
        20.0X
        19.5X
        0.4
        0.01%
        72
        26
        43
        13
        GCA_000169655.1_ASM16965v1_genomic
        48%
        92.8%
        92.0%
        20.0X
        18.4X
        0.4
        0.04%
        207
        83
        72
        4
        GCA_000169675.1_ASM16967v1_genomic
        48%
        95.6%
        94.8%
        20.0X
        19.0X
        0.4
        0.04%
        155
        69
        49
        4
        GCA_000169695.1_ASM16969v1_genomic
        48%
        95.8%
        95.0%
        20.0X
        19.0X
        0.4
        0.03%
        88
        50
        52
        4
        GCA_000170275.1_ASM17027v1_genomic
        48%
        95.6%
        94.8%
        20.0X
        19.0X
        0.4
        0.02%
        71
        34
        35
        1
        GCA_000181455.2_ASM18145v2_genomic
        48%
        96.4%
        95.7%
        20.0X
        19.1X
        0.4
        0.01%
        33
        18
        12
        0
        GCA_000182485.1_ASM18248v1_genomic
        48%
        92.0%
        91.2%
        20.0X
        18.2X
        0.4
        0.04%
        213
        82
        62
        8
        GCA_000182505.1_ASM18250v1_genomic
        48%
        94.2%
        93.4%
        20.0X
        18.7X
        0.4
        0.02%
        49
        27
        22
        4
        GCA_000182525.1_ASM18252v1_genomic
        48%
        94.9%
        94.1%
        20.0X
        18.8X
        0.4
        0.02%
        79
        26
        24
        2
        GCA_000182545.1_ASM18254v1_genomic
        48%
        94.8%
        93.9%
        20.0X
        18.8X
        0.4
        0.06%
        419
        173
        108
        7
        GCA_000182705.1_ASM18270v1_genomic
        48%
        93.1%
        92.3%
        20.0X
        18.4X
        0.4
        0.06%
        263
        86
        899
        47
        GCA_000186725.1_ASM18672v1_genomic
        48%
        93.4%
        92.6%
        20.0X
        18.5X
        0.4
        0.05%
        462
        129
        129
        7
        GCA_000222975.1_ASM22297v1_genomic
        48%
        92.9%
        92.2%
        20.0X
        18.4X
        0.4
        0.01%
        48
        15
        20
        2
        GCA_000255735.1_ASM25573v1_genomic
        48%
        94.4%
        93.6%
        20.0X
        18.7X
        0.4
        0.01%
        32
        16
        16
        2
        GCA_000255755.1_ASM25575v1_genomic
        48%
        94.2%
        93.3%
        20.0X
        18.6X
        0.4
        0.01%
        36
        71
        79
        4
        GCA_000255775.1_ASM25577v1_genomic
        48%
        94.4%
        93.6%
        20.0X
        18.7X
        0.4
        0.01%
        29
        49
        40
        1
        GCA_000255795.1_ASM25579v1_genomic
        48%
        94.0%
        92.9%
        20.0X
        18.6X
        0.4
        0.01%
        31
        76
        85
        0
        GCA_000255815.1_ASM25581v1_genomic
        48%
        93.4%
        92.5%
        20.0X
        18.5X
        0.4
        0.01%
        35
        19
        22
        0
        GCA_000255835.1_ASM25583v1_genomic
        48%
        94.0%
        93.1%
        20.0X
        18.6X
        0.4
        0.01%
        41
        43
        58
        2
        GCA_000255855.1_ASM25585v1_genomic
        48%
        94.4%
        93.4%
        20.0X
        18.7X
        0.4
        0.02%
        48
        49
        239
        5
        GCA_000255875.1_ASM25587v1_genomic
        48%
        94.3%
        93.3%
        20.0X
        18.6X
        0.4
        0.01%
        41
        70
        60
        0
        GCA_000255895.1_ASM25589v1_genomic
        48%
        94.6%
        93.7%
        20.0X
        18.7X
        0.4
        0.01%
        42
        49
        71
        1
        GCA_000268325.1_ASM26832v1_genomic
        48%
        94.4%
        92.5%
        20.0X
        18.5X
        0.4
        0.02%
        123
        21
        22
        3
        GCA_000268345.1_ASM26834v1_genomic
        48%
        94.6%
        93.1%
        20.0X
        18.6X
        0.4
        0.01%
        100
        24
        22
        6
        GCA_000268365.1_ASM26836v1_genomic
        48%
        94.7%
        93.0%
        20.0X
        18.6X
        0.4
        0.02%
        104
        30
        20
        33
        GCA_000268385.1_ASM26838v1_genomic
        48%
        94.7%
        93.2%
        20.0X
        18.6X
        0.4
        0.01%
        75
        26
        19
        2
        GCA_000268405.1_ASM26840v1_genomic
        48%
        94.7%
        93.0%
        20.0X
        18.6X
        0.4
        0.02%
        100
        28
        19
        18
        GCA_000268425.1_ASM26842v1_genomic
        48%
        94.6%
        92.8%
        20.0X
        18.5X
        0.4
        0.01%
        87
        26
        22
        2
        GCA_000268445.1_ASM26844v1_genomic
        48%
        94.6%
        92.8%
        20.0X
        18.5X
        0.4
        0.01%
        89
        33
        20
        3
        GCA_000268465.1_ASM26846v1_genomic
        48%
        94.6%
        92.7%
        20.0X
        18.5X
        0.4
        0.01%
        93
        25
        18
        2
        GCA_000268485.1_ASM26848v1_genomic
        49%
        93.1%
        90.8%
        20.0X
        18.1X
        0.4
        0.01%
        64
        23
        17
        0
        GCA_000268485.2_ASM26848v2_genomic
        49%
        93.1%
        90.8%
        20.0X
        18.1X
        0.4
        0.01%
        64
        23
        17
        0
        GCA_000268505.1_ASM26850v1_genomic
        48%
        94.7%
        93.0%
        20.0X
        18.6X
        0.4
        0.01%
        88
        25
        20
        2
        GCA_000268525.1_ASM26852v1_genomic
        48%
        91.1%
        89.3%
        20.0X
        17.8X
        0.3
        0.01%
        88
        17
        17
        6
        GCA_000268545.1_ASM26854v1_genomic
        48%
        94.5%
        92.6%
        20.0X
        18.5X
        0.4
        0.01%
        89
        24
        18
        3
        GCA_000268565.1_ASM26856v1_genomic
        48%
        94.2%
        91.7%
        20.0X
        18.3X
        0.4
        0.02%
        123
        22
        21
        7
        GCA_000268585.1_ASM26858v1_genomic
        48%
        94.7%
        92.9%
        20.0X
        18.6X
        0.4
        0.01%
        108
        29
        21
        2
        GCA_000268605.1_ASM26860v1_genomic
        48%
        94.5%
        92.4%
        20.0X
        18.5X
        0.4
        0.01%
        62
        31
        20
        2
        GCA_000268625.1_ASM26862v1_genomic
        48%
        94.8%
        93.1%
        20.0X
        18.6X
        0.4
        0.01%
        79
        27
        19
        3
        GCA_000268645.1_ASM26864v1_genomic
        48%
        94.7%
        93.0%
        20.0X
        18.6X
        0.4
        0.02%
        77
        28
        17
        24
        GCA_000268665.1_ASM26866v1_genomic
        48%
        94.7%
        92.8%
        20.0X
        18.5X
        0.4
        0.02%
        107
        51
        19
        21
        GCA_000268685.1_ASM26868v1_genomic
        48%
        94.7%
        93.2%
        20.0X
        18.6X
        0.4
        0.02%
        107
        21
        20
        21
        GCA_000268705.1_ASM26870v1_genomic
        48%
        94.5%
        92.7%
        20.0X
        18.5X
        0.4
        0.01%
        77
        27
        19
        2
        GCA_000268725.1_ASM26872v1_genomic
        48%
        94.6%
        92.9%
        20.0X
        18.5X
        0.4
        0.02%
        125
        26
        21
        6
        GCA_000268725.2_ASM26872v2_genomic
        48%
        94.6%
        92.9%
        20.0X
        18.5X
        0.4
        0.02%
        125
        26
        21
        6
        GCA_000268745.1_ASM26874v1_genomic
        48%
        94.7%
        93.2%
        20.0X
        18.6X
        0.4
        0.02%
        94
        31
        20
        3
        GCA_000268765.1_ASM26876v1_genomic
        48%
        94.4%
        92.4%
        20.0X
        18.5X
        0.4
        0.01%
        80
        27
        19
        3
        GCA_000268785.1_ASM26878v1_genomic
        48%
        94.2%
        91.9%
        20.0X
        18.4X
        0.4
        0.01%
        90
        29
        18
        2
        GCA_000268805.1_ASM26880v1_genomic
        49%
        92.7%
        88.2%
        20.0X
        17.6X
        0.3
        0.01%
        71
        21
        12
        3
        GCA_000268805.2_ASM26880v2_genomic
        49%
        92.7%
        88.2%
        20.0X
        17.6X
        0.3
        0.01%
        71
        21
        12
        3
        GCA_000268825.1_ASM26882v1_genomic
        48%
        94.7%
        93.1%
        20.0X
        18.6X
        0.4
        0.02%
        94
        26
        18
        5
        GCA_000268845.1_ASM26884v1_genomic
        48%
        94.4%
        92.3%
        20.0X
        18.4X
        0.4
        0.02%
        83
        34
        19
        41
        GCA_000268865.1_ASM26886v1_genomic
        48%
        93.5%
        90.7%
        20.0X
        18.1X
        0.4
        0.01%
        86
        25
        17
        3
        GCA_000268865.2_ASM26886v2_genomic
        48%
        93.5%
        90.7%
        20.0X
        18.1X
        0.4
        0.01%
        86
        25
        17
        3
        GCA_000268885.1_ASM26888v1_genomic
        48%
        94.4%
        92.4%
        20.0X
        18.5X
        0.4
        0.01%
        83
        23
        19
        3
        GCA_000268905.1_ASM26890v1_genomic
        48%
        94.7%
        93.0%
        20.0X
        18.6X
        0.4
        0.01%
        89
        28
        19
        1
        GCA_000268925.1_ASM26892v1_genomic
        48%
        94.6%
        92.8%
        20.0X
        18.5X
        0.4
        0.02%
        99
        30
        18
        27
        GCA_000268945.1_ASM26894v1_genomic
        48%
        94.0%
        90.6%
        20.0X
        18.1X
        0.3
        0.02%
        83
        27
        20
        8
        GCA_000268965.1_ASM26896v1_genomic
        48%
        94.6%
        93.0%
        20.0X
        18.6X
        0.4
        0.02%
        94
        30
        37
        24
        GCA_000268985.1_ASM26898v1_genomic
        48%
        91.3%
        89.7%
        20.0X
        17.9X
        0.3
        0.01%
        74
        14
        15
        2
        GCA_000269005.1_ASM26900v1_genomic
        48%
        91.2%
        89.3%
        20.0X
        17.8X
        0.3
        0.01%
        64
        15
        14
        5
        GCA_000269025.1_ASM26902v1_genomic
        48%
        91.3%
        89.8%
        20.0X
        17.9X
        0.3
        0.01%
        102
        61
        32
        22
        GCA_000269045.1_ASM26904v1_genomic
        48%
        94.4%
        92.0%
        20.0X
        18.4X
        0.4
        0.01%
        98
        31
        19
        0
        GCA_000269065.1_ASM26906v1_genomic
        48%
        94.4%
        92.8%
        20.0X
        18.5X
        0.4
        0.02%
        145
        26
        20
        36
        GCA_000269085.1_ASM26908v1_genomic
        48%
        94.4%
        92.6%
        20.0X
        18.5X
        0.4
        0.02%
        87
        31
        20
        3
        GCA_000269105.1_ASM26910v1_genomic
        48%
        94.7%
        92.9%
        20.0X
        18.5X
        0.4
        0.02%
        83
        30
        19
        4
        GCA_000269125.1_ASM26912v1_genomic
        48%
        94.7%
        93.1%
        20.0X
        18.6X
        0.4
        0.01%
        69
        28
        19
        3
        GCA_000269145.1_ASM26914v1_genomic
        48%
        94.6%
        92.7%
        20.0X
        18.5X
        0.4
        0.02%
        86
        28
        20
        3
        GCA_000269165.1_ASM26916v1_genomic
        48%
        94.6%
        92.9%
        20.0X
        18.5X
        0.4
        0.02%
        91
        28
        20
        2
        GCA_000269185.1_ASM26918v1_genomic
        48%
        94.6%
        92.8%
        20.0X
        18.5X
        0.4
        0.02%
        80
        29
        18
        2
        GCA_000269205.1_ASM26920v1_genomic
        48%
        94.4%
        92.6%
        20.0X
        18.5X
        0.4
        0.02%
        94
        30
        20
        2
        GCA_000269225.1_ASM26922v1_genomic
        48%
        94.5%
        92.6%
        20.0X
        18.5X
        0.4
        0.02%
        135
        27
        20
        2
        GCA_000269245.1_ASM26924v1_genomic
        48%
        94.1%
        92.0%
        20.0X
        18.4X
        0.4
        0.02%
        91
        28
        19
        19
        GCA_000269265.1_ASM26926v1_genomic
        48%
        94.6%
        92.5%
        20.0X
        18.5X
        0.4
        0.02%
        123
        31
        18
        34
        GCA_000269285.1_ASM26928v1_genomic
        48%
        94.6%
        93.0%
        20.0X
        18.6X
        0.4
        0.02%
        111
        28
        20
        3
        GCA_000269285.2_ASM26928v2_genomic
        48%
        94.6%
        93.0%
        20.0X
        18.6X
        0.4
        0.02%
        111
        28
        20
        3
        GCA_000269305.1_ASM26930v1_genomic
        48%
        94.8%
        93.2%
        20.0X
        18.6X
        0.4
        0.01%
        99
        29
        20
        3
        GCA_000269325.1_ASM26932v1_genomic
        48%
        94.6%
        92.8%
        20.0X
        18.5X
        0.4
        0.02%
        73
        30
        20
        1
        GCA_000269345.1_ASM26934v1_genomic
        48%
        94.3%
        91.9%
        20.0X
        18.4X
        0.4
        0.02%
        99
        27
        19
        9
        GCA_000269365.1_ASM26936v1_genomic
        48%
        94.6%
        92.8%
        20.0X
        18.5X
        0.4
        0.02%
        142
        28
        20
        5
        GCA_000269385.1_ASM26938v1_genomic
        49%
        91.3%
        86.9%
        20.0X
        17.3X
        0.3
        0.02%
        79
        44
        18
        19
        GCA_000269405.1_ASM26940v1_genomic
        48%
        94.3%
        91.9%
        20.0X
        18.4X
        0.4
        0.02%
        122
        25
        22
        4
        GCA_000269425.1_ASM26942v1_genomic
        48%
        94.6%
        92.6%
        20.0X
        18.5X
        0.4
        0.01%
        67
        27
        19
        3
        GCA_000269445.1_ASM26944v1_genomic
        48%
        94.7%
        93.2%
        20.0X
        18.6X
        0.4
        0.02%
        94
        29
        19
        4
        GCA_000269465.1_ASM26946v1_genomic
        48%
        94.6%
        93.0%
        20.0X
        18.6X
        0.4
        0.02%
        127
        28
        40
        36
        GCA_000269485.1_ASM26948v1_genomic
        48%
        92.9%
        89.8%
        20.0X
        17.9X
        0.3
        0.01%
        90
        22
        16
        3
        GCA_000275685.1_ASM27568v1_genomic
        48%
        94.2%
        93.4%
        20.0X
        18.6X
        0.4
        0.04%
        226
        82
        66
        4
        GCA_000311885.1_ASM31188v1_genomic
        48%
        93.0%
        92.3%
        20.0X
        18.4X
        0.4
        0.00%
        63
        0
        0
        1
        GCA_000320425.1_ASM32042v1_genomic
        49%
        88.6%
        84.8%
        20.0X
        16.9X
        0.3
        0.04%
        330
        84
        70
        2
        GCA_000320445.1_ASM32044v1_genomic
        49%
        89.6%
        86.0%
        20.0X
        17.2X
        0.3
        0.02%
        168
        49
        35
        1
        GCA_000320465.1_ASM32046v1_genomic
        48%
        90.0%
        87.3%
        20.0X
        17.4X
        0.3
        0.02%
        132
        46
        35
        0
        GCA_000323185.1_ASM32318v1_genomic
        48%
        90.1%
        86.4%
        20.0X
        17.3X
        0.3
        0.03%
        239
        58
        54
        1
        GCA_000323205.1_ASM32320v1_genomic
        48%
        91.5%
        88.0%
        20.0X
        17.6X
        0.3
        0.03%
        214
        58
        52
        0
        GCA_000323225.1_ASM32322v1_genomic
        48%
        91.6%
        88.8%
        20.0X
        17.7X
        0.3
        0.03%
        213
        59
        53
        0
        GCA_000323245.1_ASM32324v1_genomic
        48%
        87.0%
        77.7%
        20.0X
        15.5X
        0.3
        0.03%
        186
        62
        51
        6
        GCA_000323285.1_ASM32328v1_genomic
        48%
        92.4%
        89.9%
        20.0X
        18.0X
        0.3
        0.01%
        75
        29
        24
        0
        GCA_000323305.1_ASM32330v1_genomic
        49%
        88.7%
        85.0%
        20.0X
        17.0X
        0.3
        0.02%
        161
        52
        34
        0
        GCA_000323325.1_ASM32332v1_genomic
        48%
        91.3%
        87.0%
        20.0X
        17.4X
        0.3
        0.02%
        166
        52
        38
        1
        GCA_000323345.1_ASM32334v1_genomic
        49%
        88.9%
        84.4%
        20.0X
        16.8X
        0.3
        0.02%
        163
        45
        39
        2
        GCA_000323365.1_ASM32336v1_genomic
        48%
        91.7%
        88.7%
        20.0X
        17.7X
        0.3
        0.03%
        228
        58
        55
        0
        GCA_000323385.1_ASM32338v1_genomic
        48%
        90.5%
        83.4%
        20.0X
        16.6X
        0.3
        0.02%
        132
        41
        31
        8
        GCA_000323405.1_ASM32340v1_genomic
        48%
        91.3%
        88.2%
        20.0X
        17.6X
        0.3
        0.02%
        144
        46
        33
        0
        GCA_000323425.1_ASM32342v1_genomic
        48%
        91.5%
        87.6%
        20.0X
        17.5X
        0.3
        0.03%
        248
        68
        53
        2
        GCA_000323445.1_ASM32344v1_genomic
        48%
        91.6%
        88.1%
        20.0X
        17.6X
        0.3
        0.01%
        81
        33
        24
        0
        GCA_000323465.1_ASM32346v1_genomic
        48%
        86.6%
        83.3%
        20.0X
        16.6X
        0.3
        0.02%
        172
        53
        39
        2
        GCA_000323485.1_ASM32348v1_genomic
        48%
        90.3%
        86.5%
        20.0X
        17.3X
        0.3
        0.06%
        576
        95
        115
        7
        GCA_000323505.1_ASM32350v1_genomic
        48%
        92.4%
        89.8%
        20.0X
        17.9X
        0.3
        0.02%
        139
        44
        38
        0
        GCA_000323525.1_ASM32352v1_genomic
        48%
        90.8%
        85.7%
        20.0X
        17.1X
        0.3
        0.02%
        136
        51
        27
        1
        GCA_000323545.1_ASM32354v1_genomic
        48%
        90.7%
        86.9%
        20.0X
        17.3X
        0.3
        0.01%
        72
        34
        24
        0
        GCA_000323565.1_ASM32356v1_genomic
        48%
        88.2%
        84.4%
        20.0X
        16.8X
        0.3
        0.03%
        183
        58
        46
        0
        GCA_000323585.1_ASM32358v1_genomic
        48%
        90.1%
        87.0%
        20.0X
        17.4X
        0.3
        0.03%
        182
        52
        42
        0
        GCA_000323605.1_ASM32360v1_genomic
        48%
        92.1%
        89.4%
        20.0X
        17.8X
        0.3
        0.01%
        81
        31
        21
        0
        GCA_000323625.1_ASM32362v1_genomic
        48%
        90.1%
        85.4%
        20.0X
        17.0X
        0.3
        0.04%
        333
        89
        74
        4
        GCA_000323645.1_ASM32364v1_genomic
        48%
        88.7%
        85.5%
        20.0X
        17.1X
        0.3
        0.03%
        180
        57
        43
        1
        GCA_000323665.1_ASM32366v1_genomic
        49%
        85.5%
        81.2%
        20.0X
        16.2X
        0.3
        0.03%
        223
        50
        46
        2
        GCA_000323685.1_ASM32368v1_genomic
        49%
        88.6%
        84.8%
        20.0X
        16.9X
        0.3
        0.02%
        85
        33
        25
        0
        GCA_000323705.1_ASM32370v1_genomic
        48%
        91.6%
        88.7%
        20.0X
        17.7X
        0.3
        0.02%
        139
        47
        33
        0
        GCA_000323725.1_ASM32372v1_genomic
        48%
        89.2%
        83.8%
        20.0X
        16.7X
        0.3
        0.03%
        179
        65
        49
        7
        GCA_000323745.1_ASM32374v1_genomic
        49%
        87.2%
        82.3%
        20.0X
        16.4X
        0.3
        0.01%
        80
        23
        15
        1
        GCA_000323765.1_ASM32376v1_genomic
        48%
        92.5%
        89.2%
        20.0X
        17.8X
        0.3
        0.02%
        143
        51
        28
        0
        GCA_000323785.1_ASM32378v1_genomic
        48%
        92.5%
        89.3%
        20.0X
        17.8X
        0.3
        0.01%
        83
        26
        22
        1
        GCA_000323805.1_ASM32380v1_genomic
        48%
        91.5%
        87.1%
        20.0X
        17.4X
        0.3
        0.02%
        84
        32
        25
        0
        GCA_000323825.1_ASM32382v1_genomic
        48%
        89.0%
        85.3%
        20.0X
        17.0X
        0.3
        0.02%
        76
        31
        27
        0
        GCA_000323845.1_ASM32384v1_genomic
        48%
        89.7%
        84.8%
        20.0X
        16.9X
        0.3
        0.05%
        557
        68
        81
        7
        GCA_000323865.1_ASM32386v1_genomic
        49%
        89.2%
        84.7%
        20.0X
        16.9X
        0.3
        0.01%
        74
        34
        25
        0
        GCA_000323885.1_ASM32388v1_genomic
        48%
        90.5%
        87.1%
        20.0X
        17.4X
        0.3
        0.01%
        80
        33
        23
        1
        GCA_000323905.1_ASM32390v1_genomic
        48%
        90.9%
        86.2%
        20.0X
        17.2X
        0.3
        0.02%
        169
        58
        36
        3
        GCA_000323925.1_ASM32392v1_genomic
        48%
        89.5%
        85.6%
        20.0X
        17.1X
        0.3
        0.02%
        167
        53
        38
        0
        GCA_000323945.1_ASM32394v1_genomic
        48%
        89.5%
        79.5%
        20.0X
        15.8X
        0.3
        0.03%
        190
        52
        47
        0
        GCA_000323965.1_ASM32396v1_genomic
        49%
        89.8%
        86.1%
        20.0X
        17.2X
        0.3
        0.02%
        70
        31
        27
        2
        GCA_000323985.1_ASM32398v1_genomic
        49%
        85.6%
        80.0%
        20.0X
        16.0X
        0.3
        0.01%
        45
        14
        13
        2
        GCA_000324005.1_ASM32400v1_genomic
        48%
        88.0%
        84.4%
        20.0X
        16.8X
        0.3
        0.03%
        181
        54
        48
        1
        GCA_000324025.1_ASM32402v1_genomic
        48%
        91.9%
        89.2%
        20.0X
        17.8X
        0.3
        0.03%
        188
        56
        50
        1
        GCA_000324045.1_ASM32404v1_genomic
        48%
        90.7%
        85.6%
        20.0X
        17.1X
        0.3
        0.05%
        402
        95
        94
        9
        GCA_000324065.1_ASM32406v1_genomic
        49%
        85.9%
        81.1%
        20.0X
        16.2X
        0.3
        0.02%
        125
        38
        29
        4
        GCA_000324085.1_ASM32408v1_genomic
        49%
        86.8%
        82.0%
        20.0X
        16.4X
        0.3
        0.02%
        79
        33
        25
        2
        GCA_000324105.1_ASM32410v1_genomic
        49%
        88.3%
        84.1%
        20.0X
        16.8X
        0.3
        0.01%
        77
        24
        24
        4
        GCA_000324125.1_ASM32412v1_genomic
        48%
        91.2%
        87.2%
        20.0X
        17.4X
        0.3
        0.02%
        174
        49
        41
        1
        GCA_000324145.1_ASM32414v1_genomic
        48%
        92.3%
        89.4%
        20.0X
        17.8X
        0.3
        0.02%
        173
        54
        42
        2
        GCA_000324165.1_ASM32416v1_genomic
        48%
        90.9%
        87.4%
        20.0X
        17.5X
        0.3
        0.02%
        135
        46
        36
        0
        GCA_000324185.1_ASM32418v1_genomic
        48%
        90.0%
        86.4%
        20.0X
        17.2X
        0.3
        0.03%
        238
        56
        53
        1
        GCA_000324205.1_ASM32420v1_genomic
        48%
        91.8%
        88.1%
        20.0X
        17.6X
        0.3
        0.03%
        258
        62
        50
        0
        GCA_000324225.1_ASM32422v1_genomic
        48%
        92.2%
        89.4%
        20.0X
        17.9X
        0.3
        0.03%
        230
        62
        55
        0
        GCA_000324245.1_ASM32424v1_genomic
        49%
        89.6%
        85.7%
        20.0X
        17.1X
        0.3
        0.02%
        170
        54
        36
        2
        GCA_000324265.1_ASM32426v1_genomic
        48%
        88.4%
        85.2%
        20.0X
        17.0X
        0.3
        0.02%
        182
        60
        36
        0
        GCA_000324285.1_ASM32428v1_genomic
        49%
        87.0%
        82.0%
        20.0X
        16.4X
        0.3
        0.01%
        67
        26
        16
        2
        GCA_000324305.1_ASM32430v1_genomic
        48%
        87.9%
        84.2%
        20.0X
        16.8X
        0.3
        0.03%
        175
        55
        37
        1
        GCA_000324325.1_ASM32432v1_genomic
        49%
        85.4%
        79.6%
        20.0X
        15.9X
        0.3
        0.02%
        122
        38
        22
        4
        GCA_000324345.1_ASM32434v1_genomic
        48%
        89.8%
        87.1%
        20.0X
        17.4X
        0.3
        0.03%
        247
        60
        53
        1
        GCA_000324365.1_ASM32436v1_genomic
        48%
        91.2%
        87.5%
        20.0X
        17.5X
        0.3
        0.01%
        82
        28
        24
        0
        GCA_000324385.1_ASM32438v1_genomic
        48%
        89.2%
        80.8%
        20.0X
        16.1X
        0.3
        0.02%
        67
        35
        26
        4
        GCA_000324405.1_ASM32440v1_genomic
        48%
        92.4%
        88.4%
        20.0X
        17.6X
        0.3
        0.01%
        85
        27
        26
        0
        GCA_000324425.1_ASM32442v1_genomic
        48%
        92.2%
        89.3%
        20.0X
        17.8X
        0.3
        0.01%
        54
        19
        19
        0
        GCA_000324445.1_ASM32444v1_genomic
        48%
        87.9%
        84.1%
        20.0X
        16.8X
        0.3
        0.03%
        178
        51
        53
        0
        GCA_000324465.1_ASM32446v1_genomic
        48%
        89.4%
        86.0%
        20.0X
        17.2X
        0.3
        0.05%
        401
        86
        88
        3
        GCA_000324485.1_ASM32448v1_genomic
        49%
        85.9%
        80.9%
        20.0X
        16.2X
        0.3
        0.03%
        168
        50
        46
        1
        GCA_000324505.1_ASM32450v1_genomic
        48%
        88.8%
        84.6%
        20.0X
        16.9X
        0.3
        0.02%
        176
        48
        39
        3
        GCA_000324525.1_ASM32452v1_genomic
        48%
        91.6%
        88.0%
        20.0X
        17.6X
        0.3
        0.05%
        425
        93
        87
        3
        GCA_000324545.1_ASM32454v1_genomic
        49%
        87.7%
        83.0%
        20.0X
        16.6X
        0.3
        0.02%
        170
        43
        41
        2
        GCA_000324565.1_ASM32456v1_genomic
        48%
        91.8%
        88.7%
        20.0X
        17.7X
        0.3
        0.02%
        180
        52
        41
        0
        GCA_000324585.1_ASM32458v1_genomic
        49%
        86.8%
        81.5%
        20.0X
        16.3X
        0.3
        0.02%
        164
        46
        36
        1
        GCA_000324605.1_ASM32460v1_genomic
        49%
        89.2%
        84.9%
        20.0X
        16.9X
        0.3
        0.03%
        188
        51
        54
        2
        GCA_000324625.1_ASM32462v1_genomic
        48%
        92.3%
        87.4%
        20.0X
        17.4X
        0.3
        0.01%
        67
        19
        22
        0
        GCA_000324645.1_ASM32464v1_genomic
        49%
        87.4%
        82.8%
        20.0X
        16.5X
        0.3
        0.01%
        58
        18
        24
        3
        GCA_000324665.1_ASM32466v1_genomic
        48%
        89.9%
        86.4%
        20.0X
        17.2X
        0.3
        0.05%
        401
        91
        90
        4
        GCA_000324685.1_ASM32468v1_genomic
        48%
        89.6%
        86.2%
        20.0X
        17.2X
        0.3
        0.02%
        85
        31
        22
        0
        GCA_000324705.1_ASM32470v1_genomic
        48%
        89.9%
        84.6%
        20.0X
        16.9X
        0.3
        0.02%
        76
        38
        25
        0
        GCA_000324725.1_ASM32472v1_genomic
        48%
        90.3%
        87.2%
        20.0X
        17.4X
        0.3
        0.02%
        80
        35
        25
        1
        GCA_000324745.1_ASM32474v1_genomic
        48%
        91.8%
        87.4%
        20.0X
        17.4X
        0.3
        0.02%
        83
        39
        26
        6
        GCA_000324765.1_ASM32476v1_genomic
        49%
        89.3%
        85.3%
        20.0X
        17.0X
        0.3
        0.01%
        70
        19
        26
        2
        GCA_000324785.1_ASM32478v1_genomic
        48%
        92.4%
        89.2%
        20.0X
        17.8X
        0.3
        0.01%
        80
        28
        25
        0
        GCA_000324805.2_EV76-CN_genomic
        48%
        89.0%
        87.3%
        20.0X
        17.4X
        0.3
        0.03%
        172
        14
        41
        13
        GCA_000324825.1_ASM32482v1_genomic
        48%
        90.7%
        86.1%
        20.0X
        17.2X
        0.3
        0.01%
        49
        15
        13
        4
        GCA_000324845.1_ASM32484v1_genomic
        48%
        92.5%
        88.8%
        20.0X
        17.7X
        0.3
        0.01%
        80
        24
        24
        0
        GCA_000324865.1_ASM32486v1_genomic
        49%
        87.9%
        82.9%
        20.0X
        16.5X
        0.3
        0.01%
        58
        19
        18
        2
        GCA_000324885.1_ASM32488v1_genomic
        48%
        91.6%
        88.7%
        20.0X
        17.7X
        0.3
        0.02%
        170
        54
        41
        0
        GCA_000324905.1_ASM32490v1_genomic
        48%
        92.0%
        89.3%
        20.0X
        17.8X
        0.3
        0.02%
        175
        53
        42
        0
        GCA_000324925.1_ASM32492v1_genomic
        48%
        87.3%
        84.3%
        20.0X
        16.8X
        0.3
        0.07%
        681
        96
        133
        5
        GCA_000324945.1_ASM32494v1_genomic
        49%
        84.8%
        80.2%
        20.0X
        16.0X
        0.3
        0.02%
        169
        27
        33
        3
        GCA_000324965.1_ASM32496v1_genomic
        48%
        90.7%
        87.5%
        20.0X
        17.5X
        0.3
        0.02%
        174
        52
        41
        1
        GCA_000324985.1_ASM32498v1_genomic
        48%
        89.1%
        84.9%
        20.0X
        16.9X
        0.3
        0.02%
        177
        54
        40
        1
        GCA_000325005.1_ASM32500v1_genomic
        48%
        91.5%
        87.3%
        20.0X
        17.4X
        0.3
        0.03%
        184
        55
        51
        1
        GCA_000325025.1_ASM32502v1_genomic
        49%
        89.7%
        85.6%
        20.0X
        17.1X
        0.3
        0.03%
        187
        51
        50
        1
        GCA_000325045.1_ASM32504v1_genomic
        49%
        87.8%
        83.7%
        20.0X
        16.7X
        0.3
        0.03%
        189
        56
        52
        0
        GCA_000325065.1_ASM32506v1_genomic
        48%
        91.2%
        86.8%
        20.0X
        17.3X
        0.3
        0.03%
        193
        55
        56
        0
        GCA_000325085.1_ASM32508v1_genomic
        48%
        91.6%
        86.1%
        20.0X
        17.2X
        0.3
        0.03%
        199
        58
        50
        1
        GCA_000325105.1_ASM32510v1_genomic
        48%
        89.8%
        86.1%
        20.0X
        17.2X
        0.3
        0.03%
        181
        51
        44
        1
        GCA_000325125.1_ASM32512v1_genomic
        48%
        92.3%
        88.4%
        20.0X
        17.6X
        0.3
        0.02%
        196
        48
        41
        1
        GCA_000325145.1_ASM32514v1_genomic
        48%
        89.0%
        85.9%
        20.0X
        17.1X
        0.3
        0.03%
        178
        61
        45
        0
        GCA_000325165.1_ASM32516v1_genomic
        48%
        89.2%
        84.9%
        20.0X
        16.9X
        0.3
        0.01%
        78
        27
        22
        1
        GCA_000325185.1_ASM32518v1_genomic
        48%
        89.8%
        85.9%
        20.0X
        17.1X
        0.3
        0.05%
        394
        84
        90
        3
        GCA_000325205.1_ASM32520v1_genomic
        48%
        91.7%
        88.9%
        20.0X
        17.7X
        0.3
        0.02%
        172
        55
        47
        0
        GCA_000325225.1_ASM32522v1_genomic
        49%
        89.1%
        85.0%
        20.0X
        17.0X
        0.3
        0.02%
        144
        42
        26
        0
        GCA_000325245.1_ASM32524v1_genomic
        48%
        90.3%
        86.3%
        20.0X
        17.2X
        0.3
        0.02%
        169
        44
        35
        0
        GCA_000325265.1_ASM32526v1_genomic
        48%
        87.8%
        84.4%
        20.0X
        16.9X
        0.3
        0.02%
        151
        43
        36
        0
        GCA_000325285.1_ASM32528v1_genomic
        49%
        87.4%
        83.0%
        20.0X
        16.6X
        0.3
        0.02%
        151
        39
        31
        2
        GCA_000325305.1_ASM32530v1_genomic
        49%
        90.0%
        86.3%
        20.0X
        17.2X
        0.3
        0.02%
        160
        48
        36
        2
        GCA_000325325.1_ASM32532v1_genomic
        49%
        88.8%
        84.7%
        20.0X
        16.9X
        0.3
        0.03%
        182
        48
        50
        0
        GCA_000325345.1_ASM32534v1_genomic
        49%
        88.3%
        83.6%
        20.0X
        16.7X
        0.3
        0.03%
        178
        55
        55
        2
        GCA_000325365.1_ASM32536v1_genomic
        48%
        90.8%
        86.1%
        20.0X
        17.2X
        0.3
        0.01%
        72
        28
        28
        3
        GCA_000325385.1_ASM32538v1_genomic
        48%
        86.8%
        80.4%
        20.0X
        16.0X
        0.3
        0.01%
        68
        26
        24
        2
        GCA_000325405.1_ASM32540v1_genomic
        49%
        86.7%
        81.4%
        20.0X
        16.2X
        0.3
        0.01%
        59
        18
        18
        4
        GCA_000325425.1_ASM32542v1_genomic
        48%
        92.4%
        89.4%
        20.0X
        17.9X
        0.3
        0.01%
        58
        20
        26
        0
        GCA_000325445.1_ASM32544v1_genomic
        49%
        87.5%
        83.1%
        20.0X
        16.6X
        0.3
        0.01%
        58
        24
        21
        0
        GCA_000325465.1_ASM32546v1_genomic
        48%
        92.5%
        88.6%
        20.0X
        17.7X
        0.3
        0.01%
        81
        22
        19
        1
        GCA_000325485.1_ASM32548v1_genomic
        49%
        85.4%
        81.1%
        20.0X
        16.2X
        0.3
        0.01%
        55
        19
        20
        1
        GCA_000382505.1_Yersinia_pestis_G1670E_assembly_genomic
        48%
        92.1%
        91.0%
        20.0X
        18.2X
        0.4
        0.09%
        723
        201
        173
        16
        GCA_000382525.1_Yersinia_pestis_G3768_assembly_genomic
        48%
        91.9%
        90.7%
        20.0X
        18.1X
        0.3
        0.10%
        GCA_000382545.1_Yersinia_pestis_assembly_genomic
        48%
        92.3%
        91.3%
        20.0X
        18.2X
        0.4
        0.08%
        704
        142
        237
        8
        GCA_000475095.2_YP009_v2_genomic
        48%
        92.2%
        91.4%
        20.0X
        18.3X
        0.4
        0.02%
        81
        85
        781
        26
        GCA_000475115.2_YP113_v2_genomic
        48%
        93.6%
        92.9%
        20.0X
        18.6X
        0.4
        0.01%
        78
        60
        264
        14
        GCA_000475135.2_YPS03_v2_genomic
        48%
        95.3%
        94.6%
        20.0X
        18.9X
        0.4
        0.03%
        264
        405
        357
        46
        GCA_000475155.2_YP24H_v2_genomic
        48%
        92.2%
        91.5%
        20.0X
        18.3X
        0.4
        0.02%
        75
        336
        379
        36
        GCA_000590535.1_EV_NIIEG_genomic
        48%
        91.7%
        90.6%
        20.0X
        18.1X
        0.3
        0.04%
        57
        37
        1397
        8
        GCA_000705315.1_EDB10_058v1_genomic
        48%
        93.5%
        91.5%
        20.0X
        18.3X
        0.4
        0.01%
        42
        12
        11
        1
        GCA_000734805.1_ASM73480v1_genomic
        48%
        93.4%
        92.2%
        20.0X
        18.4X
        0.4
        0.04%
        153
        144
        457
        4
        GCA_000754785.1_YAU_genomic
        48%
        95.0%
        94.2%
        20.0X
        18.8X
        0.4
        0.00%
        15
        7
        8
        0
        GCA_000834235.1_ASM83423v1_genomic
        48%
        96.3%
        95.5%
        20.0X
        19.1X
        0.4
        0.02%
        67
        30
        36
        3
        GCA_000834275.1_ASM83427v1_genomic
        48%
        93.4%
        92.6%
        20.0X
        18.5X
        0.4
        0.05%
        446
        120
        137
        8
        GCA_000834315.1_ASM83431v1_genomic
        48%
        93.3%
        92.4%
        20.0X
        18.5X
        0.4
        0.08%
        687
        133
        152
        11
        GCA_000834335.1_ASM83433v1_genomic
        48%
        96.4%
        95.7%
        20.0X
        19.2X
        0.4
        0.01%
        30
        15
        8
        0
        GCA_000834495.1_ASM83449v1_genomic
        48%
        96.5%
        95.7%
        20.0X
        19.1X
        0.4
        0.01%
        36
        17
        19
        0
        GCA_000834755.1_ASM83475v1_genomic
        48%
        92.9%
        92.3%
        20.0X
        18.5X
        0.4
        0.01%
        42
        16
        28
        1
        GCA_000834775.1_ASM83477v1_genomic
        48%
        95.4%
        94.7%
        20.0X
        18.9X
        0.4
        0.01%
        29
        11
        19
        0
        GCA_000834825.1_ASM83482v1_genomic
        48%
        95.4%
        94.5%
        20.0X
        18.9X
        0.4
        0.04%
        227
        62
        133
        2
        GCA_000834885.1_ASM83488v1_genomic
        48%
        93.2%
        92.5%
        20.0X
        18.5X
        0.4
        0.05%
        420
        114
        131
        5
        GCA_000834905.1_ASM83490v1_genomic
        48%
        94.5%
        93.8%
        20.0X
        18.8X
        0.4
        0.01%
        56
        25
        21
        0
        GCA_000834925.1_ASM83492v1_genomic
        48%
        94.9%
        94.0%
        20.0X
        18.8X
        0.4
        0.06%
        418
        114
        102
        8
        GCA_000834985.1_ASM83498v1_genomic
        48%
        93.5%
        92.6%
        20.0X
        18.5X
        0.4
        0.08%
        690
        143
        158
        10
        GCA_000835005.1_ASM83500v1_genomic
        48%
        85.5%
        84.5%
        20.0X
        16.9X
        0.3
        0.04%
        223
        62
        76
        2
        GCA_000950935.1_ASM95093v1_genomic
        48%
        92.0%
        90.2%
        20.0X
        18.0X
        0.3
        0.07%
        432
        201
        295
        27
        GCA_000950945.1_ASM95094v1_genomic
        48%
        94.1%
        92.7%
        20.0X
        18.5X
        0.4
        0.07%
        447
        192
        205
        29
        GCA_000970105.1_ASM97010v1_genomic
        48%
        95.2%
        94.4%
        20.0X
        18.9X
        0.4
        0.04%
        245
        79
        60
        3
        GCA_000986995.1_YPES001-SEQ-2-ASM-1_genomic
        48%
        93.8%
        93.0%
        20.0X
        19.0X
        0.4
        0.02%
        134
        27
        32
        3
        GCA_001188325.1_YPY_1_genomic
        48%
        93.4%
        92.5%
        20.0X
        18.5X
        0.4
        0.08%
        712
        142
        167
        8
        GCA_001188335.1_DYA_1_genomic
        48%
        93.4%
        92.5%
        20.0X
        18.5X
        0.4
        0.08%
        GCA_001188675.1_ASM118867v1_genomic
        48%
        94.8%
        94.1%
        20.0X
        18.8X
        0.4
        0.03%
        161
        62
        42
        3
        GCA_001188695.1_ASM118869v1_genomic
        48%
        93.5%
        92.6%
        20.0X
        18.5X
        0.4
        0.08%
        702
        143
        166
        12
        GCA_001188715.1_ASM118871v1_genomic
        48%
        93.5%
        92.7%
        20.0X
        18.5X
        0.4
        0.08%
        705
        128
        154
        11
        GCA_001188735.1_ASM118873v1_genomic
        48%
        93.1%
        92.3%
        20.0X
        18.5X
        0.4
        0.05%
        254
        93
        79
        6
        GCA_001188755.1_ASM118875v1_genomic
        48%
        92.2%
        91.4%
        20.0X
        18.2X
        0.4
        0.08%
        698
        134
        164
        12
        GCA_001188775.1_ASM118877v1_genomic
        48%
        93.5%
        92.6%
        20.0X
        18.5X
        0.4
        0.09%
        707
        140
        164
        12
        GCA_001188795.1_ASM118879v1_genomic
        48%
        93.5%
        92.6%
        20.0X
        18.5X
        0.4
        0.08%
        708
        146
        167
        10
        GCA_001188815.1_ASM118881v1_genomic
        48%
        93.1%
        92.3%
        20.0X
        18.4X
        0.4
        0.04%
        249
        75
        65
        4
        GCA_001188935.1_ASM118893v1_genomic
        48%
        93.5%
        92.6%
        20.0X
        18.5X
        0.4
        0.09%
        698
        146
        163
        12
        GCA_001261975.1_YPW_8_IHQD_genomic
        48%
        94.6%
        93.9%
        20.0X
        18.8X
        0.4
        0.04%
        247
        83
        60
        5
        GCA_001261985.1_YPW_3_IHQD_genomic
        48%
        94.1%
        93.3%
        20.0X
        18.7X
        0.4
        0.01%
        57
        20
        39
        0
        GCA_001293415.1_ASM129341v1_genomic
        48%
        94.3%
        93.5%
        20.0X
        18.7X
        0.4
        0.00%
        14
        8
        7
        0
        GCA_001294805.1_ASM129480v1_genomic
        48%
        93.6%
        92.5%
        20.0X
        18.5X
        0.4
        0.07%
        451
        149
        344
        10
        GCA_001294815.1_ASM129481v1_genomic
        48%
        92.6%
        91.6%
        20.0X
        18.3X
        0.4
        0.09%
        689
        224
        200
        17
        GCA_001294825.1_ASM129482v1_genomic
        48%
        91.8%
        90.8%
        20.0X
        18.1X
        0.4
        0.08%
        608
        157
        293
        6
        GCA_001294835.1_ASM129483v1_genomic
        48%
        94.4%
        93.5%
        20.0X
        18.7X
        0.4
        0.07%
        423
        141
        309
        14
        GCA_001294885.1_ASM129488v1_genomic
        48%
        92.4%
        91.4%
        20.0X
        18.3X
        0.4
        0.07%
        477
        193
        309
        13
        GCA_001294895.1_ASM129489v1_genomic
        48%
        92.1%
        90.8%
        20.0X
        18.1X
        0.4
        0.08%
        415
        341
        514
        27
        GCA_001294905.1_ASM129490v1_genomic
        48%
        92.6%
        91.6%
        20.0X
        18.3X
        0.4
        0.09%
        675
        180
        372
        12
        GCA_001294915.1_ASM129491v1_genomic
        48%
        92.6%
        91.6%
        20.0X
        18.3X
        0.4
        0.09%
        682
        185
        320
        10
        GCA_001294965.1_ASM129496v1_genomic
        48%
        93.2%
        92.2%
        20.0X
        18.4X
        0.4
        0.07%
        404
        149
        299
        12
        GCA_001294975.1_ASM129497v1_genomic
        48%
        93.7%
        92.5%
        20.0X
        18.5X
        0.4
        0.07%
        452
        213
        283
        12
        GCA_001294985.1_ASM129498v1_genomic
        48%
        92.6%
        91.6%
        20.0X
        18.3X
        0.4
        0.09%
        683
        180
        453
        10
        GCA_001295025.1_ASM129502v1_genomic
        48%
        94.4%
        93.5%
        20.0X
        18.7X
        0.4
        0.07%
        408
        155
        297
        11
        GCA_001295045.1_ASM129504v1_genomic
        48%
        92.6%
        91.7%
        20.0X
        18.3X
        0.4
        0.09%
        682
        173
        301
        9
        GCA_001295055.1_ASM129505v1_genomic
        48%
        92.7%
        91.7%
        20.0X
        18.3X
        0.4
        0.09%
        689
        171
        395
        13
        GCA_001295065.1_ASM129506v1_genomic
        48%
        92.5%
        91.4%
        20.0X
        18.2X
        0.4
        0.09%
        676
        190
        415
        15
        GCA_001295105.1_ASM129510v1_genomic
        48%
        92.5%
        91.4%
        20.0X
        18.2X
        0.4
        0.08%
        678
        206
        281
        14
        GCA_001295115.1_ASM129511v1_genomic
        48%
        93.7%
        92.7%
        20.0X
        18.5X
        0.4
        0.07%
        414
        243
        279
        13
        GCA_001295145.1_ASM129514v1_genomic
        48%
        92.5%
        91.5%
        20.0X
        18.3X
        0.4
        0.07%
        449
        183
        233
        12
        GCA_001295185.1_ASM129518v1_genomic
        48%
        92.4%
        91.2%
        20.0X
        18.2X
        0.4
        0.09%
        676
        234
        322
        10
        GCA_001487065.1_Yersinia_pestis_genomic
        48%
        92.6%
        91.7%
        20.0X
        18.3X
        0.4
        0.01%
        209
        14
        16
        37
        GCA_001509855.1_ASM150985v1_genomic
        48%
        96.3%
        95.5%
        20.0X
        19.1X
        0.4
        0.01%
        66
        9
        21
        5
        GCA_001509865.1_ASM150986v1_genomic
        48%
        96.4%
        95.7%
        20.0X
        19.1X
        0.4
        0.01%
        67
        21
        18
        0
        GCA_001559935.1_ASM155993v1_genomic
        48%
        93.3%
        91.7%
        20.0X
        18.3X
        0.4
        0.16%
        247
        388
        4677
        85
        GCA_001595585.1_ASM159558v1_genomic
        48%
        93.6%
        92.5%
        20.0X
        18.5X
        0.4
        0.06%
        234
        169
        457
        4
        GCA_001601285.1_ASM160128v1_genomic
        48%
        94.0%
        92.9%
        20.0X
        18.6X
        0.4
        0.06%
        193
        72
        900
        5
        GCA_001601675.1_ASM160167v1_genomic
        48%
        91.2%
        89.6%
        20.0X
        17.9X
        0.3
        0.32%
        598
        120
        10044
        149
        GCA_001601735.1_ASM160173v1_genomic
        48%
        93.2%
        91.7%
        20.0X
        18.3X
        0.4
        0.28%
        GCA_001613865.1_ASM161386v1_genomic
        48%
        91.6%
        90.0%
        20.0X
        18.0X
        0.3
        0.34%
        227
        238
        11921
        283
        GCA_001613885.1_ASM161388v1_genomic
        48%
        93.7%
        92.3%
        20.0X
        18.4X
        0.4
        0.05%
        225
        133
        497
        9
        GCA_001613895.1_ASM161389v1_genomic
        48%
        93.9%
        92.8%
        20.0X
        18.5X
        0.4
        0.05%
        236
        87
        214
        7
        GCA_001617705.1_Yersinia_pestis_C-791_genomic
        48%
        93.8%
        92.6%
        20.0X
        18.5X
        0.4
        0.06%
        229
        162
        518
        7
        GCA_001617715.1_Yersinia_pestis_M-519_genomic
        48%
        93.8%
        92.7%
        20.0X
        18.5X
        0.4
        0.05%
        282
        97
        197
        3
        GCA_001617725.1_Yersinia_pestis_M-1484_genomic
        48%
        92.6%
        91.0%
        20.0X
        18.2X
        0.4
        0.09%
        272
        230
        1710
        23
        GCA_001617735.1_Yersinia_pestis_M-1763_genomic
        48%
        93.5%
        92.3%
        20.0X
        18.4X
        0.4
        0.05%
        255
        107
        270
        3
        GCA_001617785.1_Yersinia_pestis_M-549_genomic
        48%
        92.3%
        91.1%
        20.0X
        18.2X
        0.4
        0.05%
        228
        111
        120
        3
        GCA_001617805.1_Yersinia_pestis_173_genomic
        48%
        93.7%
        92.5%
        20.0X
        18.5X
        0.4
        0.04%
        231
        105
        146
        5
        GCA_001617815.1_Yersinia_pestis_M-1453_genomic
        48%
        91.7%
        90.4%
        20.0X
        18.1X
        0.3
        0.05%
        246
        107
        363
        9
        GCA_001693595.1_ASM169359v1_genomic
        48%
        94.4%
        93.7%
        20.0X
        18.9X
        0.4
        0.01%
        28
        12
        96
        0
        GCA_001972385.1_ASM197238v1_genomic
        48%
        92.4%
        91.5%
        20.0X
        18.3X
        0.4
        0.09%
        988
        143
        157
        36
        GCA_001972395.1_ASM197239v1_genomic
        48%
        92.4%
        91.5%
        20.0X
        18.3X
        0.4
        0.09%
        890
        141
        156
        31
        GCA_001972405.1_ASM197240v1_genomic
        48%
        91.4%
        90.5%
        20.0X
        18.1X
        0.3
        0.09%
        837
        141
        148
        30
        GCA_001972415.1_ASM197241v1_genomic
        48%
        93.3%
        92.3%
        20.0X
        18.4X
        0.4
        0.09%
        935
        138
        149
        32
        GCA_001972465.1_ASM197246v1_genomic
        48%
        92.4%
        91.5%
        20.0X
        18.3X
        0.4
        0.09%
        863
        139
        153
        35
        GCA_001972475.1_ASM197247v1_genomic
        48%
        94.5%
        93.6%
        20.0X
        18.7X
        0.4
        0.07%
        639
        121
        100
        24
        GCA_001972505.1_ASM197250v1_genomic
        48%
        94.4%
        93.4%
        20.0X
        18.7X
        0.4
        0.07%
        768
        124
        114
        48
        GCA_001972515.1_ASM197251v1_genomic
        48%
        94.5%
        93.6%
        20.0X
        18.7X
        0.4
        0.07%
        564
        121
        98
        25
        GCA_002005285.1_ASM200528v1_genomic
        48%
        96.1%
        95.3%
        20.0X
        19.1X
        0.4
        0.12%
        220
        82
        2175
        145
        GCA_002127355.1_ASM212735v1_genomic
        48%
        92.5%
        91.5%
        20.0X
        18.3X
        0.4
        0.08%
        674
        141
        155
        13
        GCA_002127365.1_ASM212736v1_genomic
        48%
        92.5%
        91.5%
        20.0X
        18.3X
        0.4
        0.08%
        746
        141
        152
        21
        GCA_002127375.1_ASM212737v1_genomic
        48%
        92.3%
        91.4%
        20.0X
        18.2X
        0.4
        0.08%
        632
        141
        155
        8
        GCA_002165475.1_ASM216547v1_genomic
        48%
        92.5%
        91.5%
        20.0X
        18.3X
        0.4
        0.09%
        787
        137
        155
        19
        GCA_002173795.1_ASM217379v1_genomic
        48%
        94.5%
        93.5%
        20.0X
        18.7X
        0.4
        0.06%
        517
        122
        96
        19
        GCA_002173805.1_ASM217380v1_genomic
        48%
        94.5%
        93.5%
        20.0X
        18.7X
        0.4
        0.07%
        688
        123
        95
        30
        GCA_002173815.1_ASM217381v1_genomic
        48%
        94.3%
        93.4%
        20.0X
        18.6X
        0.4
        0.07%
        575
        120
        99
        29
        GCA_002188685.1_ASM218868v1_genomic
        48%
        94.5%
        93.6%
        20.0X
        18.7X
        0.4
        0.07%
        558
        119
        93
        19
        GCA_002188725.1_ASM218872v1_genomic
        48%
        94.5%
        93.6%
        20.0X
        18.7X
        0.4
        0.07%
        600
        114
        94
        24
        GCA_002188755.1_ASM218875v1_genomic
        48%
        94.3%
        93.3%
        20.0X
        18.6X
        0.4
        0.07%
        579
        121
        95
        30
        GCA_002188765.1_ASM218876v1_genomic
        48%
        93.8%
        92.8%
        20.0X
        18.5X
        0.4
        0.07%
        664
        112
        94
        30
        GCA_002188775.1_ASM218877v1_genomic
        48%
        94.5%
        93.6%
        20.0X
        18.7X
        0.4
        0.07%
        599
        118
        97
        27
        GCA_002188815.1_ASM218881v1_genomic
        48%
        94.4%
        93.4%
        20.0X
        18.6X
        0.4
        0.07%
        637
        119
        104
        36
        GCA_002188835.1_ASM218883v1_genomic
        48%
        95.0%
        94.2%
        20.0X
        18.8X
        0.4
        0.04%
        378
        88
        53
        19
        GCA_002188845.1_ASM218884v1_genomic
        48%
        94.4%
        93.5%
        20.0X
        18.7X
        0.4
        0.07%
        705
        119
        107
        42
        GCA_002188855.1_ASM218885v1_genomic
        48%
        93.5%
        92.7%
        20.0X
        18.5X
        0.4
        0.04%
        374
        62
        47
        29
        GCA_002412225.1_Y.pestis_A-1486_genomic
        48%
        93.0%
        91.2%
        20.0X
        18.2X
        0.4
        0.07%
        161
        349
        1289
        11
        GCA_002412235.1_Y.pestis_A-1249_genomic
        48%
        93.2%
        91.9%
        20.0X
        18.3X
        0.4
        0.09%
        477
        223
        1206
        20
        GCA_002412245.1_Y.pestis_A-1691_genomic
        48%
        94.1%
        92.6%
        20.0X
        18.5X
        0.4
        0.07%
        182
        528
        1204
        20
        GCA_002412255.1_Y.pestis_A-1836_genomic
        48%
        94.1%
        93.0%
        20.0X
        18.6X
        0.4
        0.30%
        165
        230
        11343
        226
        GCA_002412305.1_Y.pestis_A-1809_genomic
        48%
        93.4%
        91.9%
        20.0X
        18.4X
        0.4
        0.25%
        227
        117
        8645
        110
        GCA_002529545.1_ASM252954v1_genomic
        48%
        92.4%
        91.5%
        20.0X
        18.3X
        0.4
        0.04%
        266
        78
        59
        6
        GCA_002981895.1_ASM298189v1_genomic
        48%
        93.2%
        92.3%
        20.0X
        18.4X
        0.4
        0.06%
        434
        126
        101
        14
        GCA_002981915.1_ASM298191v1_genomic
        48%
        95.1%
        94.2%
        20.0X
        18.8X
        0.4
        0.06%
        447
        126
        101
        9
        GCA_002981925.1_ASM298192v1_genomic
        48%
        93.8%
        93.0%
        20.0X
        18.6X
        0.4
        0.06%
        GCA_002981955.1_ASM298195v1_genomic
        48%
        93.8%
        92.9%
        20.0X
        18.5X
        0.4
        0.06%
        476
        126
        102
        12
        GCA_002981975.1_ASM298197v1_genomic
        48%
        95.2%
        94.3%
        20.0X
        18.8X
        0.4
        0.06%
        456
        122
        104
        9
        GCA_002981995.1_ASM298199v1_genomic
        48%
        95.1%
        94.2%
        20.0X
        18.8X
        0.4
        0.06%
        474
        121
        97
        11
        GCA_002993145.1_ASM299314v1_genomic
        48%
        92.6%
        91.6%
        20.0X
        18.3X
        0.4
        0.08%
        679
        132
        240
        9
        GCA_003074155.1_ASM307415v1_genomic
        48%
        94.3%
        93.2%
        20.0X
        18.6X
        0.4
        0.04%
        161
        111
        243
        12
        GCA_003074175.1_ASM307417v1_genomic
        48%
        93.5%
        92.0%
        20.0X
        18.4X
        0.4
        0.07%
        435
        204
        549
        12
        GCA_003074195.1_ASM307419v1_genomic
        48%
        94.2%
        93.0%
        20.0X
        18.6X
        0.4
        0.04%
        157
        128
        225
        13
        GCA_003074215.1_ASM307421v1_genomic
        48%
        94.4%
        93.4%
        20.0X
        18.7X
        0.4
        0.04%
        171
        80
        227
        9
        GCA_003074235.1_ASM307423v1_genomic
        48%
        91.8%
        90.5%
        20.0X
        18.1X
        0.3
        0.09%
        157
        156
        2264
        35
        GCA_003074255.1_ASM307425v1_genomic
        48%
        94.0%
        92.9%
        20.0X
        18.5X
        0.4
        0.05%
        170
        294
        747
        8
        GCA_003074275.1_ASM307427v1_genomic
        48%
        90.7%
        88.3%
        20.0X
        17.6X
        0.3
        0.11%
        214
        187
        2931
        50
        GCA_003074295.1_ASM307429v1_genomic
        48%
        93.7%
        92.3%
        20.0X
        18.4X
        0.4
        0.05%
        227
        214
        366
        6
        GCA_003074315.1_ASM307431v1_genomic
        48%
        94.2%
        92.8%
        20.0X
        18.5X
        0.4
        0.04%
        153
        111
        408
        10
        GCA_003074335.1_ASM307433v1_genomic
        48%
        93.9%
        92.9%
        20.0X
        18.5X
        0.4
        0.05%
        233
        88
        184
        3
        GCA_003074355.1_ASM307435v1_genomic
        48%
        93.8%
        92.6%
        20.0X
        18.5X
        0.4
        0.05%
        240
        99
        203
        4
        GCA_003074375.1_ASM307437v1_genomic
        48%
        93.9%
        92.9%
        20.0X
        18.6X
        0.4
        0.05%
        240
        94
        158
        4
        GCA_003074395.1_ASM307439v1_genomic
        48%
        92.5%
        91.4%
        20.0X
        18.2X
        0.4
        0.08%
        671
        150
        200
        8
        GCA_003074415.1_ASM307441v1_genomic
        48%
        92.6%
        91.6%
        20.0X
        18.3X
        0.4
        0.08%
        685
        133
        230
        9
        GCA_003074435.1_ASM307443v1_genomic
        48%
        92.5%
        91.4%
        20.0X
        18.3X
        0.4
        0.09%
        676
        156
        368
        12
        GCA_003074535.1_ASM307453v1_genomic
        48%
        92.5%
        91.5%
        20.0X
        18.3X
        0.4
        0.04%
        179
        74
        161
        5
        GCA_003074595.1_ASM307459v1_genomic
        48%
        92.5%
        91.5%
        20.0X
        18.3X
        0.4
        0.04%
        174
        69
        124
        6
        GCA_003085855.1_ASM308585v1_genomic
        48%
        93.6%
        92.5%
        20.0X
        18.5X
        0.4
        0.05%
        246
        147
        244
        9
        GCA_003085875.1_ASM308587v1_genomic
        48%
        92.2%
        91.0%
        20.0X
        18.2X
        0.4
        0.08%
        672
        138
        403
        9
        GCA_003085895.1_ASM308589v1_genomic
        48%
        93.2%
        91.9%
        20.0X
        18.3X
        0.4
        0.07%
        414
        172
        506
        12
        GCA_003085915.1_ASM308591v1_genomic
        48%
        94.4%
        93.5%
        20.0X
        18.7X
        0.4
        0.06%
        162
        329
        1174
        13
        GCA_003085935.1_ASM308593v1_genomic
        48%
        92.5%
        91.4%
        20.0X
        18.2X
        0.4
        0.09%
        GCA_003085955.1_ASM308595v1_genomic
        48%
        93.7%
        92.6%
        20.0X
        18.5X
        0.4
        0.09%
        406
        338
        1033
        14
        GCA_003085975.1_ASM308597v1_genomic
        48%
        92.4%
        91.0%
        20.0X
        18.2X
        0.4
        0.06%
        231
        278
        485
        8
        GCA_003085995.1_ASM308599v1_genomic
        48%
        93.7%
        92.5%
        20.0X
        18.5X
        0.4
        0.05%
        234
        200
        270
        10
        GCA_003086015.1_ASM308601v1_genomic
        48%
        91.8%
        90.4%
        20.0X
        18.0X
        0.3
        0.04%
        159
        117
        313
        10
        GCA_003086035.1_ASM308603v1_genomic
        48%
        93.4%
        92.2%
        20.0X
        18.4X
        0.4
        0.08%
        409
        174
        1105
        9
        GCA_003086055.1_ASM308605v1_genomic
        48%
        93.9%
        92.8%
        20.0X
        18.5X
        0.4
        0.05%
        237
        87
        241
        3
        GCA_003086075.1_ASM308607v1_genomic
        48%
        92.6%
        90.0%
        20.0X
        18.0X
        0.3
        0.33%
        242
        213
        10642
        241
        GCA_003086095.1_ASM308609v1_genomic
        48%
        93.9%
        92.6%
        20.0X
        18.5X
        0.4
        0.06%
        228
        249
        523
        13
        GCA_003086115.1_ASM308611v1_genomic
        48%
        93.2%
        91.7%
        20.0X
        18.4X
        0.4
        0.36%
        240
        321
        11995
        323
        GCA_003086155.1_ASM308615v1_genomic
        48%
        92.4%
        91.0%
        20.0X
        18.2X
        0.4
        0.06%
        228
        257
        492
        8
        GCA_003122795.1_Y.pestis_I-2422_genomic
        48%
        93.6%
        92.1%
        20.0X
        18.4X
        0.4
        0.08%
        404
        155
        1104
        11
        GCA_003797205.1_ASM379720v1_genomic
        48%
        96.3%
        95.6%
        20.0X
        19.2X
        0.4
        0.02%
        62
        19
        28
        1
        GCA_003798085.1_ASM379808v1_genomic
        48%
        94.5%
        93.8%
        20.0X
        18.9X
        0.4
        0.02%
        56
        18
        20
        0
        GCA_003798225.1_ASM379822v1_genomic
        48%
        95.5%
        94.5%
        20.0X
        19.0X
        0.4
        0.04%
        224
        65
        85
        2
        GCA_004023585.1_ASM402358v1_genomic
        48%
        91.6%
        90.2%
        20.0X
        18.0X
        0.3
        0.04%
        219
        80
        62
        2
        GCA_004023595.1_ASM402359v1_genomic
        48%
        93.3%
        91.7%
        20.0X
        18.3X
        0.4
        0.04%
        223
        76
        62
        2
        GCA_006376415.1_ASM637641v1_genomic
        48%
        90.0%
        89.0%
        20.0X
        17.8X
        0.3
        0.06%
        232
        127
        492
        16
        GCA_006376435.1_ASM637643v1_genomic
        48%
        93.7%
        92.7%
        20.0X
        18.5X
        0.4
        0.05%
        235
        71
        440
        13
        GCA_006376475.1_ASM637647v1_genomic
        48%
        88.0%
        87.0%
        20.0X
        17.4X
        0.3
        0.08%
        216
        171
        1260
        14
        GCA_006376495.1_ASM637649v1_genomic
        48%
        90.0%
        88.9%
        20.0X
        17.8X
        0.3
        0.05%
        230
        180
        215
        8
        GCA_006376505.1_ASM637650v1_genomic
        48%
        92.3%
        91.2%
        20.0X
        18.2X
        0.4
        0.09%
        671
        188
        593
        22
        GCA_006376535.1_ASM637653v1_genomic
        48%
        89.8%
        87.9%
        20.0X
        17.5X
        0.3
        0.08%
        244
        431
        847
        58
        GCA_006376545.1_ASM637654v1_genomic
        48%
        92.3%
        91.0%
        20.0X
        18.2X
        0.4
        0.09%
        670
        203
        573
        16
        GCA_006376575.1_ASM637657v1_genomic
        48%
        90.5%
        89.4%
        20.0X
        17.8X
        0.3
        0.05%
        222
        160
        211
        7
        GCA_006376585.1_ASM637658v1_genomic
        48%
        91.8%
        90.7%
        20.0X
        18.1X
        0.3
        0.08%
        607
        135
        246
        10
        GCA_006517425.1_ASM651742v1_genomic
        48%
        94.4%
        93.5%
        20.0X
        18.7X
        0.4
        0.06%
        422
        121
        200
        9
        GCA_006546665.1_ASM654666v1_genomic
        48%
        94.4%
        93.4%
        20.0X
        18.6X
        0.4
        0.06%
        419
        116
        202
        11
        GCA_006546725.1_ASM654672v1_genomic
        48%
        94.5%
        93.5%
        20.0X
        18.7X
        0.4
        0.06%
        422
        138
        249
        12
        GCA_006546745.1_ASM654674v1_genomic
        48%
        94.3%
        93.2%
        20.0X
        18.6X
        0.4
        0.06%
        411
        120
        189
        14
        GCA_008630375.1_ASM863037v1_genomic
        48%
        92.2%
        90.8%
        20.0X
        18.1X
        0.4
        0.12%
        GCA_008630395.1_ASM863039v1_genomic
        48%
        93.3%
        92.0%
        20.0X
        18.4X
        0.4
        0.05%
        236
        190
        275
        7
        GCA_008630415.1_ASM863041v1_genomic
        48%
        91.6%
        90.4%
        20.0X
        18.0X
        0.3
        0.09%
        608
        148
        550
        15
        GCA_008630435.1_ASM863043v1_genomic
        48%
        91.3%
        90.2%
        20.0X
        18.0X
        0.3
        0.05%
        300
        109
        368
        13
        GCA_008630455.1_ASM863045v1_genomic
        48%
        91.6%
        90.5%
        20.0X
        18.1X
        0.3
        0.08%
        612
        133
        219
        9
        GCA_008630485.1_ASM863048v1_genomic
        48%
        90.8%
        89.7%
        20.0X
        17.9X
        0.3
        0.05%
        232
        108
        395
        11
        GCA_008630575.1_ASM863057v1_genomic
        48%
        93.9%
        92.8%
        20.0X
        18.5X
        0.4
        0.05%
        233
        122
        329
        12
        GCA_009295925.1_ASM929592v1_genomic
        48%
        95.3%
        94.6%
        20.0X
        18.9X
        0.4
        0.03%
        160
        70
        51
        6
        GCA_009295945.1_ASM929594v1_genomic
        48%
        93.9%
        93.1%
        20.0X
        18.6X
        0.4
        0.04%
        169
        71
        58
        14
        GCA_009295965.1_ASM929596v1_genomic
        48%
        95.5%
        94.7%
        20.0X
        18.9X
        0.4
        0.04%
        205
        85
        69
        13
        GCA_009295985.1_ASM929598v1_genomic
        48%
        94.2%
        93.4%
        20.0X
        18.7X
        0.4
        0.04%
        245
        76
        77
        9
        GCA_009296005.1_ASM929600v1_genomic
        48%
        91.8%
        91.0%
        20.0X
        18.2X
        0.4
        0.05%
        230
        74
        82
        6
        GCA_009363195.1_ASM936319v1_genomic
        48%
        95.5%
        94.7%
        20.0X
        18.9X
        0.4
        0.04%
        186
        73
        90
        14
        GCA_009667885.1_ASM966788v1_genomic
        48%
        94.4%
        93.4%
        20.0X
        18.6X
        0.4
        0.04%
        260
        76
        67
        9
        GCA_009667895.1_ASM966789v1_genomic
        48%
        94.7%
        93.7%
        20.0X
        18.7X
        0.4
        0.04%
        251
        76
        67
        5
        GCA_009667925.1_ASM966792v1_genomic
        48%
        94.7%
        93.7%
        20.0X
        18.7X
        0.4
        0.04%
        250
        81
        65
        5
        GCA_009667935.1_ASM966793v1_genomic
        48%
        94.7%
        93.7%
        20.0X
        18.7X
        0.4
        0.04%
        255
        79
        64
        6
        GCA_009667945.1_ASM966794v1_genomic
        48%
        94.5%
        93.5%
        20.0X
        18.8X
        0.4
        0.04%
        260
        84
        66
        7
        GCA_009667985.1_ASM966798v1_genomic
        48%
        94.4%
        93.4%
        20.0X
        18.7X
        0.4
        0.04%
        263
        75
        66
        9
        GCA_009669545.1_ASM966954v1_genomic
        48%
        94.6%
        93.6%
        20.0X
        18.7X
        0.4
        0.04%
        257
        81
        68
        8
        GCA_009669555.1_ASM966955v1_genomic
        48%
        94.3%
        93.3%
        20.0X
        18.6X
        0.4
        0.04%
        252
        73
        66
        5
        GCA_009669565.1_ASM966956v1_genomic
        48%
        94.5%
        93.5%
        20.0X
        18.7X
        0.4
        0.04%
        259
        75
        65
        7
        GCA_009669605.1_ASM966960v1_genomic
        48%
        94.7%
        93.7%
        20.0X
        18.7X
        0.4
        0.04%
        250
        78
        66
        5
        GCA_009669625.1_ASM966962v1_genomic
        48%
        94.7%
        93.7%
        20.0X
        18.7X
        0.4
        0.04%
        251
        78
        68
        7
        GCA_009669635.1_ASM966963v1_genomic
        48%
        94.4%
        93.4%
        20.0X
        18.6X
        0.4
        0.04%
        253
        69
        68
        6
        GCA_009669665.1_ASM966966v1_genomic
        48%
        94.7%
        93.8%
        20.0X
        18.7X
        0.4
        0.04%
        254
        80
        65
        7
        GCA_009669675.1_ASM966967v1_genomic
        48%
        94.7%
        93.7%
        20.0X
        18.7X
        0.4
        0.04%
        249
        78
        70
        5
        GCA_009669705.1_ASM966970v1_genomic
        48%
        91.9%
        91.0%
        20.0X
        18.2X
        0.4
        0.04%
        253
        74
        59
        5
        GCA_009669715.1_ASM966971v1_genomic
        48%
        94.4%
        93.4%
        20.0X
        18.7X
        0.4
        0.04%
        255
        70
        67
        7
        GCA_009669725.1_ASM966972v1_genomic
        48%
        94.5%
        93.6%
        20.0X
        18.7X
        0.4
        0.04%
        258
        81
        67
        6
        GCA_009669765.1_ASM966976v1_genomic
        48%
        94.7%
        93.7%
        20.0X
        18.7X
        0.4
        0.04%
        247
        76
        64
        7
        GCA_009669775.1_ASM966977v1_genomic
        48%
        94.7%
        93.8%
        20.0X
        18.7X
        0.4
        0.04%
        250
        80
        69
        4
        GCA_009669805.1_ASM966980v1_genomic
        48%
        94.6%
        93.7%
        20.0X
        18.7X
        0.4
        0.04%
        255
        79
        63
        4
        GCA_009669825.1_ASM966982v1_genomic
        48%
        94.4%
        93.4%
        20.0X
        18.6X
        0.4
        0.04%
        256
        67
        70
        8
        GCA_009669835.1_ASM966983v1_genomic
        48%
        94.6%
        93.6%
        20.0X
        18.7X
        0.4
        0.04%
        252
        79
        67
        6
        GCA_009669845.1_ASM966984v1_genomic
        48%
        94.4%
        93.4%
        20.0X
        18.7X
        0.4
        0.04%
        255
        68
        64
        7
        GCA_009669875.1_ASM966987v1_genomic
        48%
        94.6%
        93.7%
        20.0X
        18.7X
        0.4
        0.04%
        248
        80
        63
        5
        GCA_009669905.1_ASM966990v1_genomic
        48%
        94.4%
        93.4%
        20.0X
        18.6X
        0.4
        0.04%
        259
        70
        63
        9
        GCA_009669925.1_ASM966992v1_genomic
        48%
        94.7%
        93.7%
        20.0X
        18.7X
        0.4
        0.04%
        250
        81
        63
        4
        GCA_009669935.1_ASM966993v1_genomic
        48%
        94.4%
        93.4%
        20.0X
        18.7X
        0.4
        0.04%
        254
        72
        65
        5
        GCA_009669955.1_ASM966995v1_genomic
        48%
        94.4%
        93.5%
        20.0X
        18.7X
        0.4
        0.04%
        246
        74
        67
        4
        GCA_009669975.1_ASM966997v1_genomic
        48%
        94.7%
        93.7%
        20.0X
        18.7X
        0.4
        0.04%
        243
        78
        66
        4
        GCA_009670005.1_ASM967000v1_genomic
        48%
        94.7%
        93.7%
        20.0X
        18.7X
        0.4
        0.04%
        251
        79
        65
        4
        GCA_009670015.1_ASM967001v1_genomic
        48%
        94.5%
        93.6%
        20.0X
        18.7X
        0.4
        0.04%
        250
        75
        68
        5
        GCA_009670045.1_ASM967004v1_genomic
        48%
        94.7%
        93.7%
        20.0X
        18.7X
        0.4
        0.04%
        250
        80
        67
        5
        GCA_009670055.1_ASM967005v1_genomic
        48%
        94.6%
        93.7%
        20.0X
        18.7X
        0.4
        0.04%
        256
        77
        70
        5
        GCA_009670075.1_ASM967007v1_genomic
        48%
        94.5%
        93.5%
        20.0X
        18.7X
        0.4
        0.04%
        252
        74
        70
        11
        GCA_009670105.1_ASM967010v1_genomic
        48%
        94.4%
        93.5%
        20.0X
        18.7X
        0.4
        0.04%
        251
        76
        65
        6
        GCA_009670115.1_ASM967011v1_genomic
        48%
        93.9%
        92.9%
        20.0X
        18.6X
        0.4
        0.04%
        261
        71
        71
        8
        GCA_009670135.1_ASM967013v1_genomic
        48%
        92.6%
        91.6%
        20.0X
        18.3X
        0.4
        0.04%
        240
        66
        66
        5
        GCA_009670155.1_ASM967015v1_genomic
        48%
        92.1%
        91.1%
        20.0X
        18.2X
        0.4
        0.04%
        244
        73
        65
        9
        GCA_009670185.1_ASM967018v1_genomic
        48%
        94.7%
        93.7%
        20.0X
        18.7X
        0.4
        0.04%
        251
        79
        64
        6
        GCA_009670205.1_ASM967020v1_genomic
        48%
        94.5%
        93.6%
        20.0X
        18.7X
        0.4
        0.04%
        257
        78
        65
        6
        GCA_009670225.1_ASM967022v1_genomic
        48%
        94.5%
        93.5%
        20.0X
        18.7X
        0.4
        0.04%
        257
        76
        63
        6
        GCA_009670235.1_ASM967023v1_genomic
        48%
        94.3%
        93.3%
        20.0X
        18.6X
        0.4
        0.04%
        256
        75
        68
        6
        GCA_009670245.1_ASM967024v1_genomic
        48%
        93.9%
        92.9%
        20.0X
        18.6X
        0.4
        0.04%
        254
        71
        68
        10
        GCA_009670285.1_ASM967028v1_genomic
        48%
        94.5%
        93.5%
        20.0X
        18.7X
        0.4
        0.04%
        261
        73
        64
        12
        GCA_009670305.1_ASM967030v1_genomic
        48%
        94.4%
        93.4%
        20.0X
        18.7X
        0.4
        0.04%
        256
        76
        66
        8
        GCA_009670325.1_ASM967032v1_genomic
        48%
        94.7%
        93.7%
        20.0X
        18.7X
        0.4
        0.04%
        246
        84
        67
        4
        GCA_009670345.1_ASM967034v1_genomic
        48%
        94.4%
        93.5%
        20.0X
        18.7X
        0.4
        0.04%
        258
        80
        66
        10
        GCA_009670355.1_ASM967035v1_genomic
        48%
        92.3%
        91.3%
        20.0X
        18.2X
        0.4
        0.04%
        246
        80
        58
        6
        GCA_009670385.1_ASM967038v1_genomic
        48%
        94.4%
        93.4%
        20.0X
        18.7X
        0.4
        0.04%
        251
        73
        66
        7
        GCA_009670395.1_ASM967039v1_genomic
        48%
        94.4%
        93.5%
        20.0X
        18.7X
        0.4
        0.04%
        257
        72
        64
        6
        GCA_009670415.1_ASM967041v1_genomic
        48%
        94.5%
        93.5%
        20.0X
        18.7X
        0.4
        0.04%
        261
        72
        62
        9
        GCA_009670445.1_ASM967044v1_genomic
        48%
        94.6%
        93.7%
        20.0X
        18.7X
        0.4
        0.04%
        257
        78
        67
        5
        GCA_009670465.1_ASM967046v1_genomic
        48%
        93.9%
        93.0%
        20.0X
        18.6X
        0.4
        0.04%
        262
        76
        64
        6
        GCA_009670475.1_ASM967047v1_genomic
        48%
        94.6%
        93.7%
        20.0X
        18.7X
        0.4
        0.04%
        252
        78
        64
        6
        GCA_009670485.1_ASM967048v1_genomic
        48%
        94.6%
        93.7%
        20.0X
        18.7X
        0.4
        0.04%
        260
        80
        66
        6
        GCA_009670515.1_ASM967051v1_genomic
        48%
        94.6%
        93.7%
        20.0X
        18.7X
        0.4
        0.04%
        260
        81
        67
        7
        GCA_009670545.1_ASM967054v1_genomic
        48%
        94.5%
        93.6%
        20.0X
        18.7X
        0.4
        0.04%
        256
        79
        65
        8
        GCA_009670565.1_ASM967056v1_genomic
        48%
        94.7%
        93.7%
        20.0X
        18.7X
        0.4
        0.04%
        255
        78
        70
        7
        GCA_009670575.1_ASM967057v1_genomic
        48%
        94.7%
        93.7%
        20.0X
        18.7X
        0.4
        0.04%
        254
        78
        64
        8
        GCA_009670585.1_ASM967058v1_genomic
        48%
        94.5%
        93.5%
        20.0X
        18.7X
        0.4
        0.04%
        253
        78
        65
        7
        GCA_009670605.1_ASM967060v1_genomic
        48%
        94.7%
        93.7%
        20.0X
        18.7X
        0.4
        0.04%
        254
        81
        64
        4
        GCA_009670625.1_ASM967062v1_genomic
        48%
        94.5%
        93.5%
        20.0X
        18.7X
        0.4
        0.04%
        249
        77
        65
        5
        GCA_009670665.1_ASM967066v1_genomic
        48%
        93.2%
        92.2%
        20.0X
        18.4X
        0.4
        0.04%
        246
        71
        63
        5
        GCA_009670675.1_ASM967067v1_genomic
        48%
        94.7%
        93.8%
        20.0X
        18.7X
        0.4
        0.04%
        255
        79
        63
        8
        GCA_009670705.1_ASM967070v1_genomic
        48%
        94.7%
        93.8%
        20.0X
        18.7X
        0.4
        0.04%
        250
        78
        65
        4
        GCA_009670715.1_ASM967071v1_genomic
        48%
        91.9%
        91.0%
        20.0X
        18.2X
        0.4
        0.04%
        239
        76
        58
        5
        GCA_009670725.1_ASM967072v1_genomic
        48%
        94.7%
        93.8%
        20.0X
        18.7X
        0.4
        0.04%
        249
        78
        65
        6
        GCA_009670765.1_ASM967076v1_genomic
        48%
        94.6%
        93.7%
        20.0X
        18.7X
        0.4
        0.04%
        249
        79
        64
        5
        GCA_009670775.1_ASM967077v1_genomic
        48%
        94.7%
        93.8%
        20.0X
        18.7X
        0.4
        0.04%
        246
        75
        64
        6
        GCA_009670785.1_ASM967078v1_genomic
        48%
        94.4%
        93.4%
        20.0X
        18.7X
        0.4
        0.04%
        250
        68
        65
        6
        GCA_009670815.1_ASM967081v1_genomic
        48%
        94.7%
        93.8%
        20.0X
        18.7X
        0.4
        0.04%
        248
        80
        67
        4
        GCA_009670835.1_ASM967083v1_genomic
        48%
        94.6%
        93.7%
        20.0X
        18.7X
        0.4
        0.04%
        244
        76
        63
        6
        GCA_009670865.1_ASM967086v1_genomic
        48%
        94.4%
        93.5%
        20.0X
        18.7X
        0.4
        0.04%
        255
        69
        64
        5
        GCA_009670875.1_ASM967087v1_genomic
        48%
        94.1%
        93.2%
        20.0X
        18.6X
        0.4
        0.04%
        247
        79
        67
        4
        GCA_009670895.1_ASM967089v1_genomic
        48%
        94.7%
        93.8%
        20.0X
        18.7X
        0.4
        0.04%
        253
        79
        66
        5
        GCA_009670905.1_ASM967090v1_genomic
        48%
        94.7%
        93.7%
        20.0X
        18.7X
        0.4
        0.04%
        243
        80
        68
        4
        GCA_009670935.1_ASM967093v1_genomic
        48%
        94.4%
        93.4%
        20.0X
        18.7X
        0.4
        0.04%
        248
        70
        64
        4
        GCA_009670995.1_ASM967099v1_genomic
        48%
        94.7%
        93.8%
        20.0X
        18.7X
        0.4
        0.04%
        252
        80
        67
        5
        GCA_900095105.1_PRJEB15052_genomic
        49%
        88.5%
        85.5%
        20.0X
        17.0X
        0.3
        0.09%
        163
        152
        68
        3
        GCA_900460465.1_57940_B01_genomic
        48%
        94.3%
        93.5%
        20.0X
        18.8X
        0.4
        0.01%
        46
        15
        29
        0
        IP283
        49%
        91.9%
        86.5%
        26.0X
        24.0X
        1.3
        0.07%
        48
        4
        8
        0
        IP542
        48%
        86.9%
        84.6%
        31.0X
        28.0X
        1.5
        0.08%
        231
        20
        36
        2
        IP543
        49%
        86.8%
        82.1%
        24.0X
        21.7X
        1.1
        0.08%
        221
        18
        30
        2
        IP557
        49%
        90.0%
        85.6%
        25.0X
        23.1X
        1.2
        0.07%
        238
        20
        25
        2
        IP562
        49%
        89.8%
        85.8%
        29.0X
        26.1X
        1.4
        0.08%
        231
        19
        21
        2
        IP579
        48%
        91.1%
        86.8%
        23.0X
        22.0X
        1.2
        0.07%
        48
        2
        9
        0
        SAMEA104233046
        46%
        82.9%
        6.6%
        5.0X
        5.1X
        0.5
        1.65%
        21
        0
        3
        0
        SAMEA104233047
        47%
        74.6%
        11.2%
        4.0X
        5.1X
        0.5
        0.66%
        62
        4
        2
        0
        SAMEA104233048
        45%
        77.3%
        21.5%
        5.0X
        6.4X
        0.7
        0.60%
        158
        5
        6
        1
        SAMEA104233049
        46%
        92.8%
        67.6%
        12.0X
        11.8X
        1.2
        0.30%
        452
        21
        16
        4
        SAMEA104233050
        48%
        88.3%
        71.0%
        15.0X
        15.5X
        1.5
        0.44%
        361
        7
        6
        2
        SAMEA104488961
        49%
        94.4%
        91.9%
        39.0X
        38.6X
        3.1
        0.22%
        231
        19
        13
        2
        SAMEA1061800
        46%
        93.2%
        33.6%
        8.0X
        8.2X
        0.7
        1.08%
        32
        2
        3
        1
        SAMEA3541826
        47%
        86.8%
        27.5%
        7.0X
        7.3X
        0.7
        0.99%
        195
        3
        7
        0
        SAMEA3541827
        47%
        93.4%
        85.1%
        19.0X
        19.5X
        2.2
        1.27%
        334
        7
        9
        1
        SAMEA3713711
        44%
        88.7%
        53.3%
        10.0X
        12.0X
        0.9
        0.17%
        115
        8
        8
        2
        SAMEA3713712
        46%
        90.5%
        73.2%
        13.0X
        15.0X
        0.9
        0.24%
        166
        9
        9
        4
        SAMEA3713713
        45%
        90.7%
        81.9%
        18.0X
        19.8X
        1.4
        0.16%
        198
        11
        12
        4
        SAMEA3713714
        49%
        87.7%
        62.7%
        12.0X
        13.1X
        1.0
        0.14%
        138
        2
        6
        3
        SAMEA3713715
        48%
        90.5%
        86.6%
        24.0X
        24.2X
        1.6
        0.18%
        206
        8
        10
        3
        SAMEA3937653
        47%
        89.6%
        48.4%
        9.0X
        10.5X
        0.9
        0.11%
        61
        5
        2
        1
        SAMEA3937654
        48%
        91.5%
        81.8%
        18.0X
        18.3X
        1.6
        0.17%
        88
        4
        4
        1
        SAMEA4354665
        49%
        92.4%
        85.3%
        18.0X
        18.0X
        1.3
        0.13%
        211
        12
        22
        3
        SAMEA5054089
        47%
        95.2%
        94.4%
        39.0X
        37.9X
        2.8
        0.88%
        96
        6
        6
        2
        SAMEA5054090
        44%
        94.9%
        89.0%
        41.0X
        46.6X
        2.9
        0.89%
        103
        9
        5
        2
        SAMEA5054092
        44%
        93.6%
        84.1%
        28.0X
        30.7X
        1.4
        0.70%
        107
        13
        10
        3
        SAMEA5054093
        45%
        75.1%
        21.8%
        5.0X
        6.3X
        0.4
        1.36%
        29
        0
        3
        0
        SAMEA5661360
        50%
        83.8%
        40.2%
        8.0X
        8.8X
        0.8
        0.20%
        80
        2
        2
        0
        SAMEA5661363
        48%
        94.6%
        92.4%
        31.0X
        30.4X
        2.1
        0.13%
        223
        15
        27
        2
        SAMEA5661364
        47%
        73.8%
        10.5%
        4.0X
        5.1X
        0.5
        0.14%
        31
        0
        1
        1
        SAMEA5661365
        47%
        85.3%
        23.3%
        6.0X
        6.9X
        0.6
        0.12%
        36
        2
        2
        1
        SAMEA5661367
        48%
        90.7%
        78.7%
        19.0X
        21.1X
        1.7
        0.09%
        SAMEA5661372
        50%
        84.7%
        51.9%
        10.0X
        10.0X
        0.9
        0.11%
        131
        5
        11
        1
        SAMEA5661375
        50%
        79.6%
        22.0%
        6.0X
        6.5X
        0.5
        0.22%
        138
        2
        2
        16
        SAMEA5661384
        50%
        83.4%
        41.2%
        8.0X
        8.9X
        0.9
        0.13%
        88
        3
        5
        0
        SAMEA5661385
        47%
        81.7%
        13.3%
        5.0X
        5.8X
        0.5
        0.21%
        33
        1
        5
        4
        SAMEA5661389
        49%
        85.2%
        27.9%
        7.0X
        7.2X
        0.7
        0.13%
        56
        5
        6
        1
        SAMEA5661390
        46%
        72.2%
        8.8%
        4.0X
        4.8X
        0.5
        0.17%
        34
        3
        1
        0
        SAMEA5818798
        49%
        89.5%
        63.6%
        12.0X
        12.7X
        1.0
        0.13%
        120
        7
        4
        1
        SAMEA5818799
        49%
        92.5%
        88.0%
        35.0X
        37.4X
        2.8
        0.15%
        191
        10
        12
        6
        SAMEA5818800
        49%
        93.9%
        93.0%
        86.0X
        80.7X
        3.8
        0.15%
        213
        15
        20
        5
        SAMEA5818801
        50%
        91.3%
        80.6%
        18.0X
        18.6X
        1.4
        0.16%
        170
        5
        8
        5
        SAMEA5818803
        48%
        93.2%
        85.4%
        22.0X
        22.4X
        2.2
        0.11%
        151
        5
        8
        3
        SAMEA5818804
        48%
        88.0%
        40.8%
        8.0X
        8.8X
        0.8
        0.20%
        83
        4
        3
        5
        SAMEA5818805
        47%
        92.1%
        69.0%
        13.0X
        13.5X
        1.4
        0.13%
        105
        4
        5
        1
        SAMEA5818806
        48%
        93.3%
        86.9%
        27.0X
        27.6X
        2.5
        0.14%
        99
        3
        5
        3
        SAMEA5818808
        50%
        79.8%
        26.9%
        6.0X
        7.0X
        0.6
        0.20%
        33
        1
        0
        0
        SAMEA5818809
        51%
        90.9%
        82.0%
        25.0X
        25.6X
        2.0
        0.23%
        106
        2
        4
        2
        SAMEA5818811
        50%
        81.8%
        32.0%
        7.0X
        7.6X
        0.7
        0.19%
        34
        3
        3
        1
        SAMEA5818813
        47%
        72.5%
        10.9%
        4.0X
        5.0X
        0.5
        0.23%
        40
        0
        1
        3
        SAMEA5818815
        48%
        93.6%
        72.8%
        13.0X
        12.4X
        0.9
        0.15%
        118
        6
        5
        2
        SAMEA5818817
        45%
        90.0%
        54.9%
        10.0X
        11.3X
        1.1
        0.13%
        74
        1
        6
        1
        SAMEA5818818
        49%
        88.7%
        61.8%
        12.0X
        12.5X
        1.0
        0.22%
        89
        1
        3
        2
        SAMEA5818821
        50%
        90.0%
        75.4%
        17.0X
        18.2X
        1.3
        0.23%
        127
        4
        3
        2
        SAMEA5818822
        50%
        85.1%
        55.8%
        11.0X
        12.0X
        0.9
        0.25%
        83
        2
        2
        2
        SAMEA5818825
        49%
        84.0%
        42.3%
        8.0X
        9.3X
        0.7
        0.21%
        63
        1
        0
        1
        SAMEA5818826
        49%
        93.6%
        91.5%
        59.0X
        55.9X
        4.0
        0.22%
        SAMEA5818828
        50%
        90.2%
        76.9%
        18.0X
        19.2X
        1.4
        0.24%
        129
        5
        2
        2
        SAMEA5818829
        49%
        92.0%
        85.2%
        28.0X
        28.7X
        2.1
        0.24%
        147
        3
        6
        2
        SAMEA5818830
        49%
        91.1%
        80.1%
        21.0X
        21.9X
        1.7
        0.23%
        136
        6
        4
        2
        SAMN00715800
        49%
        90.0%
        66.7%
        13.0X
        15.0X
        1.3
        0.23%
        83
        2
        3
        1

        QualiMap

        QualiMap is a platform-independent application to facilitate the quality control of alignment sequencing data and its derivatives like feature counts.

        Coverage histogram

        Distribution of the number of locations in the reference genome with a given depth of coverage.

        For a set of DNA or RNA reads mapped to a reference sequence, such as a genome or transcriptome, the depth of coverage at a given base position is the number of high-quality reads that map to the reference at that position (Sims et al. 2014).

        Bases of a reference sequence (y-axis) are groupped by their depth of coverage (0×, 1×, …, N×) (x-axis). This plot shows the frequency of coverage depths relative to the reference sequence for each read dataset, which provides an indirect measure of the level and variation of coverage depth in the corresponding sequenced sample.

        If reads are randomly distributed across the reference sequence, this plot should resemble a Poisson distribution (Lander & Waterman 1988), with a peak indicating approximate depth of coverage, and more uniform coverage depth being reflected in a narrower spread. The optimal level of coverage depth depends on the aims of the experiment, though it should at minimum be sufficiently high to adequately address the biological question; greater uniformity of coverage is generally desirable, because it increases breadth of coverage for a given depth of coverage, allowing equivalent results to be achieved at a lower sequencing depth (Sampson et al. 2011; Sims et al. 2014). However, it is difficult to achieve uniform coverage depth in practice, due to biases introduced during sample preparation (van Dijk et al. 2014), sequencing (Ross et al. 2013) and read mapping (Sims et al. 2014).

        This plot may include a small peak for regions of the reference sequence with zero depth of coverage. Such regions may be absent from the given sample (due to a deletion or structural rearrangement), present in the sample but not successfully sequenced (due to bias in sequencing or preparation), or sequenced but not successfully mapped to the reference (due to the choice of mapping algorithm, the presence of repeat sequences, or mismatches caused by variants or sequencing errors). Related factors cause most datasets to contain some unmapped reads (Sims et al. 2014).

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        Cumulative genome coverage

        Percentage of the reference genome with at least the given depth of coverage.

        For a set of DNA or RNA reads mapped to a reference sequence, such as a genome or transcriptome, the depth of coverage at a given base position is the number of high-quality reads that map to the reference at that position, while the breadth of coverage is the fraction of the reference sequence to which reads have been mapped with at least a given depth of coverage (Sims et al. 2014).

        Defining coverage breadth in terms of coverage depth is useful, because sequencing experiments typically require a specific minimum depth of coverage over the region of interest (Sims et al. 2014), so the extent of the reference sequence that is amenable to analysis is constrained to lie within regions that have sufficient depth. With inadequate sequencing breadth, it can be difficult to distinguish the absence of a biological feature (such as a gene) from a lack of data (Green 2007).

        For increasing coverage depths (1×, 2×, …, N×), coverage breadth is calculated as the percentage of the reference sequence that is covered by at least that number of reads, then plots coverage breadth (y-axis) against coverage depth (x-axis). This plot shows the relationship between sequencing depth and breadth for each read dataset, which can be used to gauge, for example, the likely effect of a minimum depth filter on the fraction of a genome available for analysis.

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        GC content distribution

        Each solid line represents the distribution of GC content of mapped reads for a given sample.

        GC bias is the difference between the guanine-cytosine content (GC-content) of a set of sequencing reads and the GC-content of the DNA or RNA in the original sample. It is a well-known issue with sequencing systems, and may be introduced by PCR amplification, among other factors (Benjamini & Speed 2012; Ross et al. 2013).

        QualiMap calculates the GC-content of individual mapped reads, then groups those reads by their GC-content (1%, 2%, …, 100%), and plots the frequency of mapped reads (y-axis) at each level of GC-content (x-axis). This plot shows the GC-content distribution of mapped reads for each read dataset, which should ideally resemble that of the original sample. It can be useful to display the GC-content distribution of an appropriate reference sequence for comparison, and QualiMap has an option to do this (see the Qualimap 2 documentation).

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        Snippy

        Snippy Rapid haploid variant calling and core genome alignment.

        Snippy Variants

        Variant type descriptive statistics.

        The stacked bar graph shows the different variant types reported by snippy.

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        MultiQC v1.10.dev0 - Written by Phil Ewels, available on GitHub.

        This report uses HighCharts, jQuery, jQuery UI, Bootstrap, FileSaver.js and clipboard.js.